Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10461438	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10461639	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10487616	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10940577	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11740778	0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11744848	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12516650	0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs13156567	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13169816	0.81[ASN][1000 genomes]
rs13175128	0.85[AMR][1000 genomes]
rs34194290	0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs34275130	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34645667	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34962616	0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs35497805	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35602156	0.89[AMR][1000 genomes]
rs35694981	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56029970	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs66639127	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs68023515	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72751331	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525330	chr5:56931673-57320343	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv2756302	chr5:56978143-57180143	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830310	chr5:56989346-57176006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv2763454	chr5:57006531-57161140	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57120600-57123000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr5:57121400-57132800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr5:57121600-57124000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr5:57121600-57128800	Weak transcription	NHLF	lung
5	chr5:57121800-57129000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr5:57122000-57124200	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr5:57122000-57128000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr5:57122600-57125800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr5:57122600-57127400	Weak transcription	HMEC	breast

Quick Search: