Variant report

Variant	rs35497805
Chromosome Location	chr5:57079833-57079834
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:57076851..57079934-chr5:57754416..57757350,4	MCF-7	breast:
2	chr5:57077135..57082051-chr5:57753020..57756988,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000145632	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10461438	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10461639	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10487616	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10940577	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11740778	0.82[ASN][1000 genomes]
rs11744848	0.83[ASN][1000 genomes]
rs12516650	0.82[ASN][1000 genomes]
rs13156567	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13181681	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34194290	0.82[ASN][1000 genomes]
rs34275130	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34645667	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34962616	0.82[ASN][1000 genomes]
rs35694981	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56029970	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66639127	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68023515	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72751331	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525330	chr5:56931673-57320343	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv2756302	chr5:56978143-57180143	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830310	chr5:56989346-57176006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv2763454	chr5:57006531-57161140	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57075400-57080400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr5:57076400-57080200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr5:57076400-57081800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr5:57077000-57080000	Weak transcription	Stomach Mucosa	stomach
5	chr5:57079000-57080200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
6	chr5:57079000-57080600	Enhancers	Fetal Muscle Leg	muscle
7	chr5:57079000-57080800	Enhancers	Fetal Lung	lung
8	chr5:57079200-57080000	Active TSS	Skeletal Muscle Male	skeletal muscle
9	chr5:57079200-57080000	Active TSS	Skeletal Muscle Female	skeletal muscle
10	chr5:57079200-57080000	Active TSS	HSMMtube	muscle
11	chr5:57079200-57080200	Weak transcription	Placenta	Placenta
12	chr5:57079400-57080000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr5:57079400-57080000	Active TSS	Brain Anterior Caudate	brain
14	chr5:57079400-57080000	Active TSS	Psoas Muscle	Psoas
15	chr5:57079400-57080000	Active TSS	NHDF-Ad	bronchial
16	chr5:57079400-57080200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr5:57079400-57080200	Active TSS	Aorta	Aorta
18	chr5:57079400-57081200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr5:57079600-57080000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr5:57079600-57080000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr5:57079600-57080000	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr5:57079600-57080000	Active TSS	Adipose Nuclei	Adipose
23	chr5:57079600-57080000	Active TSS	Ovary	ovary
24	chr5:57079600-57080000	Active TSS	Right Atrium	heart
25	chr5:57079600-57080000	Active TSS	HMEC	breast
26	chr5:57079600-57080000	Active TSS	HUVEC	blood vessel
27	chr5:57079600-57080000	Active TSS	Osteobl	bone
28	chr5:57079600-57080200	Active TSS	Duodenum Smooth Muscle	Duodenum
29	chr5:57079600-57080400	Active TSS	Stomach Smooth Muscle	stomach
30	chr5:57079800-57080600	Enhancers	Breast Myoepithelial Primary Cells	Breast
31	chr5:57079800-57080800	Enhancers	HSMM	muscle

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