Variant report

Variant	rs2898219
Chromosome Location	chr13:55517104-55517105
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11617736	0.81[ASN][1000 genomes]
rs1350912	0.81[ASN][1000 genomes]
rs1462200	0.84[ASN][1000 genomes]
rs1580271	0.81[ASN][1000 genomes]
rs1599561	0.81[ASN][1000 genomes]
rs1841710	0.81[ASN][1000 genomes]
rs1960972	0.81[ASN][1000 genomes]
rs1993776	0.85[ASN][1000 genomes]
rs35242816	0.85[ASN][1000 genomes]
rs4307840	0.87[ASN][1000 genomes]
rs4885494	0.81[ASN][1000 genomes]
rs4885495	0.82[ASN][1000 genomes]
rs6561808	0.85[ASN][1000 genomes]
rs71439545	0.87[ASN][1000 genomes]
rs7318838	0.85[ASN][1000 genomes]
rs7326046	0.82[ASN][1000 genomes]
rs7335368	0.85[ASN][1000 genomes]
rs8000818	0.81[ASN][1000 genomes]
rs931014	0.87[ASN][1000 genomes]
rs931015	0.87[ASN][1000 genomes]
rs9527299	0.84[ASN][1000 genomes]
rs9527301	0.80[ASN][1000 genomes]
rs9536897	0.81[ASN][1000 genomes]
rs9536908	0.85[ASN][1000 genomes]
rs9536909	0.84[ASN][1000 genomes]
rs9536911	0.85[ASN][1000 genomes]
rs9563251	0.80[ASN][1000 genomes]
rs9563255	0.80[ASN][1000 genomes]
rs9569150	0.80[ASN][1000 genomes]
rs9597059	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv561702	chr13:55086271-55808127	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv561704	chr13:55395253-55764633	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases
3	nsv528493	chr13:55438905-55602402	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:55509000-55520600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr13:55509200-55519000	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr13:55509400-55519600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr13:55511200-55519000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr13:55515600-55519000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr13:55516200-55519000	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr13:55516400-55518600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr13:55516400-55518600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr13:55516600-55518600	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr13:55516600-55518600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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