Variant report

Variant	rs7326046
Chromosome Location	chr3:177629918-177629919
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1118523	0.97[ASN][1000 genomes]
rs11617736	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12873684	0.80[ASN][1000 genomes]
rs1350912	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1462200	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1580271	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1585548	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1599561	0.98[ASN][1000 genomes]
rs1841708	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1841710	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1960972	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1993776	0.97[ASN][1000 genomes]
rs2169477	0.83[EUR][1000 genomes]
rs2898219	0.82[ASN][1000 genomes]
rs35242816	0.97[ASN][1000 genomes]
rs36027061	0.86[ASN][1000 genomes]
rs4307840	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4885494	0.98[ASN][1000 genomes]
rs4885495	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs54939	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6561808	0.97[ASN][1000 genomes]
rs71439545	0.95[ASN][1000 genomes]
rs71439546	0.86[ASN][1000 genomes]
rs7318838	0.94[ASN][1000 genomes]
rs7335368	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8000818	0.98[ASN][1000 genomes]
rs931014	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs931015	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9316755	0.81[AFR][1000 genomes]
rs9527299	0.98[ASN][1000 genomes]
rs9527301	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9536897	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9536906	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9536908	0.97[ASN][1000 genomes]
rs9536909	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9536911	0.97[ASN][1000 genomes]
rs9536917	0.82[AFR][1000 genomes]
rs9536919	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9536920	0.86[ASN][1000 genomes]
rs9536925	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9563251	0.98[ASN][1000 genomes]
rs9563255	0.98[ASN][1000 genomes]
rs9563265	0.86[ASN][1000 genomes]
rs9569136	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9569150	0.89[ASN][1000 genomes]
rs9569152	0.86[ASN][1000 genomes]
rs9597059	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931055	chr3:177229521-177889872	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv979904	chr3:177624544-177633799	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:177624400-177646600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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