Variant report

Variant	rs9536920
Chromosome Location	chr13:55523923-55523924
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1118523	0.83[ASN][1000 genomes]
rs11617736	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12873684	0.91[ASN][1000 genomes]
rs1350912	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1462200	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1580271	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1585548	0.83[ASN][1000 genomes]
rs1599561	0.85[ASN][1000 genomes]
rs1841708	0.83[ASN][1000 genomes]
rs1841710	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1960972	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1993776	0.89[ASN][1000 genomes]
rs35242816	0.89[ASN][1000 genomes]
rs36027061	0.97[ASN][1000 genomes]
rs4307840	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4885494	0.85[ASN][1000 genomes]
rs4885495	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs54939	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6561808	0.89[ASN][1000 genomes]
rs71439545	0.88[ASN][1000 genomes]
rs71439546	0.97[ASN][1000 genomes]
rs7318838	0.86[ASN][1000 genomes]
rs7326046	0.86[ASN][1000 genomes]
rs7335368	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8000818	0.85[ASN][1000 genomes]
rs931014	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs931015	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9527299	0.88[ASN][1000 genomes]
rs9527301	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9536897	0.85[ASN][1000 genomes]
rs9536908	0.89[ASN][1000 genomes]
rs9536909	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9536911	0.89[ASN][1000 genomes]
rs9536919	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9536925	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9563251	0.84[ASN][1000 genomes]
rs9563255	0.84[ASN][1000 genomes]
rs9563265	0.97[ASN][1000 genomes]
rs9569150	0.97[ASN][1000 genomes]
rs9569152	0.97[ASN][1000 genomes]
rs9569157	0.88[ASN][1000 genomes]
rs9597059	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv561702	chr13:55086271-55808127	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv561704	chr13:55395253-55764633	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases
3	nsv528493	chr13:55438905-55602402	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:55519200-55535600	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr13:55523200-55529000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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