Variant report
Variant | rs54939 |
---|---|
Chromosome Location | chr13:55552706-55552707 |
allele | G/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs11617736 | 0.84[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs12873684 | 0.95[ASN][1000 genomes] |
rs1350912 | 0.84[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs1462200 | 0.88[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs1580271 | 0.85[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs1585548 | 0.83[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs1841708 | 0.83[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs1841710 | 0.82[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs1960972 | 0.80[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs2169477 | 0.83[EUR][1000 genomes] |
rs36027061 | 0.89[ASN][1000 genomes] |
rs4307840 | 0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs4885495 | 0.83[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs71439545 | 0.81[ASN][1000 genomes] |
rs71439546 | 0.89[ASN][1000 genomes] |
rs7326046 | 0.83[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs7335368 | 0.80[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs931014 | 0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs931015 | 0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs9527301 | 0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs9536897 | 0.83[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs9536906 | 0.83[EUR][1000 genomes] |
rs9536909 | 0.87[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs9536919 | 0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs9536920 | 0.87[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs9536925 | 0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs9563265 | 0.89[ASN][1000 genomes] |
rs9569136 | 0.82[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs9569150 | 0.87[ASN][1000 genomes] |
rs9569152 | 0.89[ASN][1000 genomes] |
rs9569157 | 0.98[ASN][1000 genomes] |
rs9597059 | 0.80[AMR][1000 genomes];0.93[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv561702 | chr13:55086271-55808127 | Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 5 gene(s) | inside rSNPs | diseases |
2 | nsv561704 | chr13:55395253-55764633 | Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 1 gene(s) | inside rSNPs | diseases |
3 | nsv528493 | chr13:55438905-55602402 | ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
4 | nsv916484 | chr13:55528644-55979043 | Weak transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 1 gene(s) | inside rSNPs | diseases |
5 | nsv523903 | chr13:55552706-55554303 | Enhancers Weak transcription | lncRNA | n/a | inside rSNPs | n/a |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr13:55550200-55553400 | Weak transcription | HUES48 Cell Line | embryonic stem cell |