Variant report

Variant	rs2898494
Chromosome Location	chr8:19871580-19871581
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs1059507	0.89[ASN][1000 genomes]
rs11570892	0.85[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs12114914	0.82[AMR][1000 genomes]
rs12541270	0.83[AMR][1000 genomes]
rs12543608	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12544152	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12544171	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12544475	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12544485	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12545849	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12548902	0.82[AMR][1000 genomes]
rs12549165	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12549191	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12549417	0.82[AMR][1000 genomes]
rs13251424	0.83[AMR][1000 genomes]
rs13252698	0.83[AMR][1000 genomes]
rs13253283	0.83[AMR][1000 genomes]
rs13254929	0.82[AMR][1000 genomes]
rs13258187	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13261242	0.83[AMR][1000 genomes]
rs13263007	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13264064	0.82[AMR][1000 genomes]
rs13270968	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13282790	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1372339	0.93[ASN][1000 genomes]
rs1372345	0.93[ASN][1000 genomes]
rs1441765	0.93[ASN][1000 genomes]
rs1441777	0.93[ASN][1000 genomes]
rs1561750	0.93[ASN][1000 genomes]
rs1569210	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1569211	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1569212	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1596102	0.93[ASN][1000 genomes]
rs17091872	0.93[ASN][1000 genomes]
rs17411294	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17489518	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2410616	0.93[ASN][1000 genomes]
rs2410617	0.93[ASN][1000 genomes]
rs2410626	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2898497	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs294	0.84[ASN][1000 genomes]
rs303	0.84[ASN][1000 genomes]
rs310	0.84[ASN][1000 genomes]
rs312	0.85[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs316	0.85[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs330	0.85[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs34037978	0.82[AMR][1000 genomes]
rs34211025	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34214665	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34292846	0.81[AMR][1000 genomes]
rs34346317	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34538958	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34569632	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34575744	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34716293	0.93[ASN][1000 genomes]
rs34770253	0.93[ASN][1000 genomes]
rs34825050	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34875285	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35001898	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35234854	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35330363	0.80[EUR][1000 genomes]
rs35481807	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35620853	0.81[AMR][1000 genomes]
rs35806919	0.86[AMR][1000 genomes]
rs35815571	0.93[ASN][1000 genomes]
rs35892161	0.83[AMR][1000 genomes]
rs36124048	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3866471	0.89[ASN][1000 genomes]
rs4319113	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4341175	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4403423	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4406410	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4442164	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4577974	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4921683	0.89[ASN][1000 genomes]
rs4921684	0.89[ASN][1000 genomes]
rs4922115	0.82[CHB][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs4922116	0.93[ASN][1000 genomes]
rs4922123	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55956142	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56119834	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62498166	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7015401	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7814176	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7814717	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7833382	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7845015	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv610759	chr8:19561997-20068842	Enhancers Strong transcription Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv498082	chr8:19722435-19873112	Bivalent Enhancer Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	esv32767	chr8:19740189-19873082	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	nsv1033511	chr8:19751299-20625091	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	esv11099	chr8:19871323-19872028	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:19865600-19877000	Weak transcription	Left Ventricle	heart
2	chr8:19867400-19881800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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