Variant report

Variant	rs34211025
Chromosome Location	chr8:19880379-19880380
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs1059507	0.80[ASN][1000 genomes]
rs12114914	0.82[AMR][1000 genomes]
rs12541270	0.83[AMR][1000 genomes]
rs12543608	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12544152	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12544171	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12544475	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12544485	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12545849	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12548902	0.82[AMR][1000 genomes]
rs12549165	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12549191	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12549417	0.82[AMR][1000 genomes]
rs13251424	0.83[AMR][1000 genomes]
rs13252698	0.83[AMR][1000 genomes]
rs13253283	0.83[AMR][1000 genomes]
rs13254929	0.82[AMR][1000 genomes]
rs13258187	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13261242	0.83[AMR][1000 genomes]
rs13263007	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13264064	0.82[AMR][1000 genomes]
rs13270968	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13282790	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1372339	0.84[ASN][1000 genomes]
rs1372345	0.84[ASN][1000 genomes]
rs1441765	0.84[ASN][1000 genomes]
rs1441777	0.84[ASN][1000 genomes]
rs1561750	0.84[ASN][1000 genomes]
rs1569210	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1569211	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1569212	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1596102	0.84[ASN][1000 genomes]
rs17091872	0.84[ASN][1000 genomes]
rs17411294	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17489518	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2410616	0.84[ASN][1000 genomes]
rs2410617	0.84[ASN][1000 genomes]
rs2410626	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2898494	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2898497	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34037978	0.82[AMR][1000 genomes]
rs34214665	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34292846	0.81[AMR][1000 genomes]
rs34346317	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34538958	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34569632	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34575744	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34716293	0.84[ASN][1000 genomes]
rs34770253	0.84[ASN][1000 genomes]
rs34825050	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34875285	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35001898	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35234854	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35481807	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35620853	0.81[AMR][1000 genomes]
rs35806919	0.84[AMR][1000 genomes]
rs35815571	0.84[ASN][1000 genomes]
rs35892161	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs36124048	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3866471	0.80[ASN][1000 genomes]
rs4319113	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4341175	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4403423	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4406410	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4442164	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4577974	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4921683	0.80[ASN][1000 genomes]
rs4921684	0.80[ASN][1000 genomes]
rs4922116	0.84[ASN][1000 genomes]
rs4922123	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55956142	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56119834	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62498166	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7015401	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7814176	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7814717	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7833382	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7845015	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv610759	chr8:19561997-20068842	Enhancers Strong transcription Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1033511	chr8:19751299-20625091	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv530877	chr8:19873053-20593254	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv890633	chr8:19875100-19985382	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:19867400-19881800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links