Variant report

Variant	rs28986291
Chromosome Location	chr6:29536465-29536466
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs12525400	0.90[AMR][1000 genomes]
rs12528017	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17177816	1.00[AFR][1000 genomes]
rs17178028	0.90[AMR][1000 genomes]
rs2267635	0.90[AMR][1000 genomes]
rs28893512	0.90[AMR][1000 genomes]
rs28986295	1.00[AFR][1000 genomes]
rs28986296	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs28986299	1.00[AFR][1000 genomes]
rs28986301	0.90[AMR][1000 genomes]
rs28986303	0.85[AMR][1000 genomes]
rs28986306	0.85[AMR][1000 genomes]
rs28986307	0.81[AMR][1000 genomes]
rs28986308	0.80[AMR][1000 genomes]
rs29242	0.90[AMR][1000 genomes]
rs29255	0.90[AMR][1000 genomes]
rs3025645	0.81[AMR][1000 genomes]
rs3025646	0.85[AMR][1000 genomes]
rs3025649	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs362521	0.90[AMR][1000 genomes]
rs3828923	0.80[AMR][1000 genomes]
rs41286283	0.90[AMR][1000 genomes]
rs41291762	0.81[AMR][1000 genomes]
rs41291766	0.90[AMR][1000 genomes]
rs41291774	1.00[AFR][1000 genomes]
rs715044	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758039	chr6:29469101-29672665	Flanking Active TSS Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	esv2759411	chr6:29469101-29672665	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv5239	chr6:29527407-29566446	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:29534800-29536600	Enhancers	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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