Variant report

Variant	rs41291762
Chromosome Location	chr6:29584752-29584753
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:29577860..29580564-chr6:29584385..29586719,2	K562	blood:
2	chr6:29584016..29586304-chr6:29588506..29590464,2	MCF-7	breast:
3	chr6:29581672..29583351-chr6:29584179..29587675,3	K562	blood:

Variant related genes	Relation type
ENSG00000204681	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs12525400	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12528017	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17178028	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2267635	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28893512	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28893514	0.81[EUR][1000 genomes]
rs28893515	0.81[EUR][1000 genomes]
rs28893516	0.81[EUR][1000 genomes]
rs28893517	0.81[EUR][1000 genomes]
rs28986291	0.81[AMR][1000 genomes]
rs28986295	0.82[EUR][1000 genomes]
rs28986296	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28986299	0.87[EUR][1000 genomes]
rs28986301	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28986303	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28986306	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28986307	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28986308	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs29242	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs29255	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3025645	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3025646	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3025649	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs362521	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3828923	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs41286283	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs41291766	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs715044	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758039	chr6:29469101-29672665	Flanking Active TSS Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	esv2759411	chr6:29469101-29672665	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv528285	chr6:29566842-29588146	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv462671	chr6:29566842-29588146	Strong transcription Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv601229	chr6:29566842-29588146	Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:29566400-29595200	Weak transcription	Right Atrium	heart
2	chr6:29566600-29587000	Strong transcription	Primary neutrophils fromperipheralblood	blood
3	chr6:29566800-29590000	Strong transcription	H9 Cell Line	embryonic stem cell
4	chr6:29566800-29590600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr6:29567000-29589800	Strong transcription	HUES6 Cell Line	embryonic stem cell
6	chr6:29567200-29589400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
7	chr6:29567200-29589800	Strong transcription	HUES64 Cell Line	embryonic stem cell
8	chr6:29567600-29592400	Strong transcription	Fetal Stomach	stomach
9	chr6:29567600-29595400	Weak transcription	A549	lung
10	chr6:29568600-29595200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr6:29569000-29592400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr6:29569200-29592200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr6:29569400-29592000	Strong transcription	Stomach Smooth Muscle	stomach
14	chr6:29569400-29595600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr6:29570800-29589600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
16	chr6:29571600-29589800	Strong transcription	HUES48 Cell Line	embryonic stem cell
17	chr6:29572000-29590000	Strong transcription	H1 Cell Line	embryonic stem cell
18	chr6:29572200-29588800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr6:29572200-29595600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr6:29572400-29592000	Strong transcription	Fetal Brain Female	brain
21	chr6:29572400-29593000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr6:29572800-29586000	Strong transcription	iPS-15b Cell Line	embryonic stem cell
23	chr6:29573000-29591000	Weak transcription	Duodenum Mucosa	Duodenum
24	chr6:29574400-29595400	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr6:29574800-29595000	Weak transcription	Pancreas	Pancrea
26	chr6:29575200-29588800	Weak transcription	Primary T cells fromperipheralblood	blood
27	chr6:29575200-29590800	Weak transcription	Primary T cells from cord blood	blood
28	chr6:29575400-29591600	Weak transcription	Colonic Mucosa	Colon
29	chr6:29575600-29587000	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr6:29576200-29588200	Weak transcription	Rectal Smooth Muscle	rectum
31	chr6:29576400-29588400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr6:29576800-29589600	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr6:29576800-29589800	Weak transcription	Placenta	Placenta
34	chr6:29577000-29591600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
35	chr6:29577400-29585400	Weak transcription	NHDF-Ad	bronchial
36	chr6:29577400-29587000	Weak transcription	Gastric	stomach
37	chr6:29577400-29590200	Weak transcription	Fetal Intestine Small	intestine
38	chr6:29577600-29585400	Weak transcription	Fetal Brain Male	brain
39	chr6:29577600-29595400	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr6:29577800-29588600	Weak transcription	HSMM	muscle
41	chr6:29578800-29589800	Weak transcription	Esophagus	oesophagus
42	chr6:29578800-29595200	Weak transcription	Pancreatic Islets	Pancreatic Islet
43	chr6:29579200-29587000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr6:29579200-29588800	Weak transcription	Brain Hippocampus Middle	brain
45	chr6:29579600-29589800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
46	chr6:29580400-29592200	Strong transcription	Muscle Satellite Cultured Cells	--
47	chr6:29581200-29591600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr6:29581400-29587600	Weak transcription	HSMMtube	muscle
49	chr6:29581400-29588000	Weak transcription	Right Ventricle	heart
50	chr6:29581400-29588600	Weak transcription	Brain Angular Gyrus	brain

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