Variant report

Variant	rs28987106
Chromosome Location	chr10:99247771-99247772
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:99245926..99248075-chr10:99252387..99254399,2	K562	blood:
2	chr10:99245187..99248138-chr10:99256409..99258187,2	MCF-7	breast:
3	chr10:99247476..99249114-chr10:99251586..99254225,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000155229	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17112837	1.00[AMR][1000 genomes]
rs29001273	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs29001325	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3814552	1.00[AMR][1000 genomes]
rs59951048	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99215400-99254600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr10:99230800-99250400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:99237200-99254800	Weak transcription	Small Intestine	intestine
4	chr10:99237800-99248200	Weak transcription	Fetal Heart	heart
5	chr10:99238000-99250200	Weak transcription	Fetal Brain Male	brain
6	chr10:99238200-99249800	Weak transcription	Psoas Muscle	Psoas
7	chr10:99239200-99254600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr10:99239400-99257400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr10:99239600-99250400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr10:99240800-99249200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr10:99240800-99254600	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr10:99240800-99256000	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr10:99240800-99257400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr10:99241000-99250200	Weak transcription	Colon Smooth Muscle	Colon
15	chr10:99241000-99250600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr10:99241000-99254600	Weak transcription	K562	blood
17	chr10:99241200-99250000	Weak transcription	HSMMtube	muscle
18	chr10:99241200-99250400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr10:99241200-99250400	Weak transcription	Fetal Lung	lung
20	chr10:99241200-99250400	Weak transcription	Gastric	stomach
21	chr10:99241200-99250400	Weak transcription	Ovary	ovary
22	chr10:99241200-99253600	Weak transcription	Fetal Kidney	kidney
23	chr10:99241200-99254600	Weak transcription	Esophagus	oesophagus
24	chr10:99241200-99254800	Weak transcription	Stomach Mucosa	stomach
25	chr10:99241200-99256800	Weak transcription	Colonic Mucosa	Colon
26	chr10:99241200-99256800	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr10:99241400-99250400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr10:99241400-99250400	Weak transcription	Aorta	Aorta
29	chr10:99241400-99254200	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr10:99241800-99248000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
31	chr10:99241800-99248800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr10:99241800-99252800	Weak transcription	Lung	lung
33	chr10:99241800-99256400	Weak transcription	Pancreatic Islets	Pancreatic Islet
34	chr10:99242000-99250400	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr10:99242200-99249200	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr10:99242200-99250200	Weak transcription	Primary neutrophils fromperipheralblood	blood
37	chr10:99242200-99252600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr10:99242400-99248800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
39	chr10:99242400-99248800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr10:99242400-99250200	Weak transcription	Rectal Smooth Muscle	rectum
41	chr10:99243600-99248400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
42	chr10:99243600-99248800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr10:99243600-99249000	Weak transcription	NHDF-Ad	bronchial
44	chr10:99243600-99249200	Weak transcription	NHLF	lung
45	chr10:99243600-99250200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
46	chr10:99243600-99250600	Weak transcription	Liver	Liver
47	chr10:99243800-99248000	Weak transcription	Brain Angular Gyrus	brain
48	chr10:99243800-99248000	Weak transcription	Brain Substantia Nigra	brain
49	chr10:99243800-99248200	Weak transcription	Brain Cingulate Gyrus	brain
50	chr10:99243800-99248200	Weak transcription	Brain Hippocampus Middle	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links