Variant report

Variant	rs29001273
Chromosome Location	chr10:99243073-99243074
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17112837	1.00[AMR][1000 genomes]
rs28987106	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs29001325	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3814552	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99210000-99243800	Strong transcription	Primary T cells from cord blood	blood
2	chr10:99210000-99243800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
3	chr10:99210000-99244000	Strong transcription	Fetal Stomach	stomach
4	chr10:99210000-99244200	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr10:99210200-99243800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr10:99210400-99243600	Strong transcription	Primary monocytes fromperipheralblood	blood
7	chr10:99210400-99244800	Strong transcription	Fetal Thymus	thymus
8	chr10:99210600-99243800	Strong transcription	Duodenum Mucosa	Duodenum
9	chr10:99210600-99244200	Strong transcription	Placenta	Placenta
10	chr10:99210800-99243800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr10:99210800-99244000	Strong transcription	Sigmoid Colon	Sigmoid Colon
12	chr10:99210800-99246000	Strong transcription	Primary B cells from peripheral blood	blood
13	chr10:99211000-99243800	Strong transcription	Primary T helper cells fromperipheralblood	blood
14	chr10:99211000-99246400	Strong transcription	Dnd41	blood
15	chr10:99211200-99244800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr10:99211200-99246200	Strong transcription	Primary T cells fromperipheralblood	blood
17	chr10:99211200-99246600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr10:99214400-99246400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr10:99214600-99243800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr10:99214600-99243800	Strong transcription	Stomach Smooth Muscle	stomach
21	chr10:99214800-99243800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr10:99215200-99243800	Strong transcription	Primary T helper cells PMA-I stimulated	--
23	chr10:99215400-99243800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr10:99215400-99254600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr10:99216800-99243800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr10:99218200-99244000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr10:99224200-99245000	Strong transcription	Fetal Intestine Small	intestine
28	chr10:99224400-99244800	Strong transcription	Fetal Intestine Large	intestine
29	chr10:99227600-99246600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr10:99230800-99250400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr10:99232200-99243600	Strong transcription	Liver	Liver
32	chr10:99232200-99244200	Strong transcription	Primary B cells from cord blood	blood
33	chr10:99232600-99244000	Strong transcription	Fetal Brain Female	brain
34	chr10:99233400-99246400	Strong transcription	GM12878-XiMat	blood
35	chr10:99235400-99243800	Strong transcription	Rectal Mucosa Donor 29	rectum
36	chr10:99236200-99243600	Strong transcription	NHDF-Ad	bronchial
37	chr10:99237000-99243400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr10:99237000-99243800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr10:99237000-99243800	Strong transcription	Osteobl	bone
40	chr10:99237200-99254800	Weak transcription	Small Intestine	intestine
41	chr10:99237800-99248200	Weak transcription	Fetal Heart	heart
42	chr10:99238000-99250200	Weak transcription	Fetal Brain Male	brain
43	chr10:99238200-99249800	Weak transcription	Psoas Muscle	Psoas
44	chr10:99239200-99254600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr10:99239400-99257400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr10:99239600-99244200	Strong transcription	Primary hematopoietic stem cells	blood
47	chr10:99239600-99250400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr10:99240000-99243800	Strong transcription	HepG2	liver
49	chr10:99240600-99243600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr10:99240800-99244200	Strong transcription	HUES64 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links