Variant report

Variant	rs28987118
Chromosome Location	chr10:99233348-99233349
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:99226413..99227990-chr10:99232015..99233764,2	K562	blood:

Variant related genes	Relation type
ENSG00000155229	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs28987103	1.00[AFR][1000 genomes]
rs28987115	1.00[AFR][1000 genomes]
rs29001260	1.00[AFR][1000 genomes]
rs29001276	1.00[AFR][1000 genomes]
rs29001282	1.00[AFR][1000 genomes]
rs29001310	1.00[AFR][1000 genomes]
rs29001317	0.81[AFR][1000 genomes]
rs29001329	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99206800-99234200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr10:99210000-99243800	Strong transcription	Primary T cells from cord blood	blood
3	chr10:99210000-99243800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
4	chr10:99210000-99244000	Strong transcription	Fetal Stomach	stomach
5	chr10:99210000-99244200	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr10:99210200-99243800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr10:99210400-99243600	Strong transcription	Primary monocytes fromperipheralblood	blood
8	chr10:99210400-99244800	Strong transcription	Fetal Thymus	thymus
9	chr10:99210600-99234600	Strong transcription	Rectal Mucosa Donor 29	rectum
10	chr10:99210600-99238800	Strong transcription	HUES6 Cell Line	embryonic stem cell
11	chr10:99210600-99239000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr10:99210600-99241800	Strong transcription	Thymus	Thymus
13	chr10:99210600-99243800	Strong transcription	Duodenum Mucosa	Duodenum
14	chr10:99210600-99244200	Strong transcription	Placenta	Placenta
15	chr10:99210800-99239000	Strong transcription	HUES64 Cell Line	embryonic stem cell
16	chr10:99210800-99243800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr10:99210800-99244000	Strong transcription	Sigmoid Colon	Sigmoid Colon
18	chr10:99210800-99246000	Strong transcription	Primary B cells from peripheral blood	blood
19	chr10:99211000-99238800	Strong transcription	HUES48 Cell Line	embryonic stem cell
20	chr10:99211000-99243800	Strong transcription	Primary T helper cells fromperipheralblood	blood
21	chr10:99211000-99246400	Strong transcription	Dnd41	blood
22	chr10:99211200-99244800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr10:99211200-99246200	Strong transcription	Primary T cells fromperipheralblood	blood
24	chr10:99211200-99246600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr10:99211400-99239000	Strong transcription	H1 Cell Line	embryonic stem cell
26	chr10:99211400-99241600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
27	chr10:99211600-99239000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
28	chr10:99211800-99241200	Strong transcription	Rectal Mucosa Donor 31	rectum
29	chr10:99214000-99235600	Strong transcription	Brain Inferior Temporal Lobe	brain
30	chr10:99214200-99234400	Strong transcription	Lung	lung
31	chr10:99214400-99242000	Strong transcription	Fetal Muscle Trunk	muscle
32	chr10:99214400-99246400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr10:99214600-99242800	Strong transcription	Fetal Muscle Leg	muscle
34	chr10:99214600-99243800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr10:99214600-99243800	Strong transcription	Stomach Smooth Muscle	stomach
36	chr10:99214800-99243800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr10:99215000-99234600	Strong transcription	Colon Smooth Muscle	Colon
38	chr10:99215000-99238000	Strong transcription	Fetal Lung	lung
39	chr10:99215200-99242400	Strong transcription	Left Ventricle	heart
40	chr10:99215200-99243800	Strong transcription	Primary T helper cells PMA-I stimulated	--
41	chr10:99215400-99243800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
42	chr10:99215400-99254600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
43	chr10:99215800-99235200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr10:99216800-99243800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr10:99217200-99237200	Weak transcription	Fetal Heart	heart
46	chr10:99217800-99242000	Strong transcription	Primary T helper naive cells from peripheral blood	blood
47	chr10:99218200-99244000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr10:99222000-99236000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr10:99223800-99235600	Strong transcription	Brain Hippocampus Middle	brain
50	chr10:99224000-99235000	Strong transcription	Osteobl	bone

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