Variant report

Variant	rs29001282
Chromosome Location	chr10:99237447-99237448
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:99212693..99215031-chr10:99236502..99238177,2	MCF-7	breast:
2	chr10:99224078..99227999-chr10:99236379..99238987,3	K562	blood:
3	chr10:99236922..99238932-chr10:99241740..99243324,2	K562	blood:
4	chr10:99235824..99238488-chr10:99250423..99252230,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000171307	Chromatin interaction
ENSG00000264677	Chromatin interaction
ENSG00000155229	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs28987103	1.00[AFR][1000 genomes]
rs28987115	1.00[AFR][1000 genomes]
rs28987118	1.00[AFR][1000 genomes]
rs29001260	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs29001276	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs29001310	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs29001317	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs29001328	1.00[EUR][1000 genomes]
rs29001329	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4356162	1.00[EUR][1000 genomes]
rs59190388	1.00[EUR][1000 genomes]
rs73326858	1.00[EUR][1000 genomes]
rs73326861	1.00[EUR][1000 genomes]
rs73326865	1.00[EUR][1000 genomes]
rs73326869	1.00[EUR][1000 genomes]
rs73326879	1.00[EUR][1000 genomes]
rs73328805	1.00[EUR][1000 genomes]
rs7912065	1.00[EUR][1000 genomes]
rs7919755	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99210000-99243800	Strong transcription	Primary T cells from cord blood	blood
2	chr10:99210000-99243800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
3	chr10:99210000-99244000	Strong transcription	Fetal Stomach	stomach
4	chr10:99210000-99244200	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr10:99210200-99243800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr10:99210400-99243600	Strong transcription	Primary monocytes fromperipheralblood	blood
7	chr10:99210400-99244800	Strong transcription	Fetal Thymus	thymus
8	chr10:99210600-99238800	Strong transcription	HUES6 Cell Line	embryonic stem cell
9	chr10:99210600-99239000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr10:99210600-99241800	Strong transcription	Thymus	Thymus
11	chr10:99210600-99243800	Strong transcription	Duodenum Mucosa	Duodenum
12	chr10:99210600-99244200	Strong transcription	Placenta	Placenta
13	chr10:99210800-99239000	Strong transcription	HUES64 Cell Line	embryonic stem cell
14	chr10:99210800-99243800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr10:99210800-99244000	Strong transcription	Sigmoid Colon	Sigmoid Colon
16	chr10:99210800-99246000	Strong transcription	Primary B cells from peripheral blood	blood
17	chr10:99211000-99238800	Strong transcription	HUES48 Cell Line	embryonic stem cell
18	chr10:99211000-99243800	Strong transcription	Primary T helper cells fromperipheralblood	blood
19	chr10:99211000-99246400	Strong transcription	Dnd41	blood
20	chr10:99211200-99244800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr10:99211200-99246200	Strong transcription	Primary T cells fromperipheralblood	blood
22	chr10:99211200-99246600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr10:99211400-99239000	Strong transcription	H1 Cell Line	embryonic stem cell
24	chr10:99211400-99241600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
25	chr10:99211600-99239000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
26	chr10:99211800-99241200	Strong transcription	Rectal Mucosa Donor 31	rectum
27	chr10:99214400-99242000	Strong transcription	Fetal Muscle Trunk	muscle
28	chr10:99214400-99246400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr10:99214600-99242800	Strong transcription	Fetal Muscle Leg	muscle
30	chr10:99214600-99243800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr10:99214600-99243800	Strong transcription	Stomach Smooth Muscle	stomach
32	chr10:99214800-99243800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr10:99215000-99238000	Strong transcription	Fetal Lung	lung
34	chr10:99215200-99242400	Strong transcription	Left Ventricle	heart
35	chr10:99215200-99243800	Strong transcription	Primary T helper cells PMA-I stimulated	--
36	chr10:99215400-99243800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
37	chr10:99215400-99254600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
38	chr10:99216800-99243800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr10:99217800-99242000	Strong transcription	Primary T helper naive cells from peripheral blood	blood
40	chr10:99218200-99244000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr10:99224200-99245000	Strong transcription	Fetal Intestine Small	intestine
42	chr10:99224400-99244800	Strong transcription	Fetal Intestine Large	intestine
43	chr10:99225000-99240400	Strong transcription	A549	lung
44	chr10:99225400-99242000	Strong transcription	Brain Substantia Nigra	brain
45	chr10:99225600-99238800	Strong transcription	HepG2	liver
46	chr10:99227600-99238000	Strong transcription	Hela-S3	cervix
47	chr10:99227600-99246600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr10:99228200-99240400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
49	chr10:99229200-99238800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
50	chr10:99229600-99242200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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