Variant report

Variant	rs59190388
Chromosome Location	chr10:99087402-99087403
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:99050766..99052270-chr10:99085293..99087979,2	MCF-7	breast:
2	chr10:99086397..99088974-chr10:99118500..99121306,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12098344	1.00[EUR][1000 genomes]
rs29001260	1.00[EUR][1000 genomes]
rs29001276	1.00[EUR][1000 genomes]
rs29001282	1.00[EUR][1000 genomes]
rs29001310	1.00[EUR][1000 genomes]
rs29001317	1.00[EUR][1000 genomes]
rs29001328	1.00[EUR][1000 genomes]
rs29001329	1.00[EUR][1000 genomes]
rs4356162	1.00[EUR][1000 genomes]
rs58575155	1.00[AMR][1000 genomes]
rs7095780	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73326825	1.00[EUR][1000 genomes]
rs73326858	1.00[EUR][1000 genomes]
rs73326861	1.00[EUR][1000 genomes]
rs73326865	1.00[EUR][1000 genomes]
rs73326869	1.00[EUR][1000 genomes]
rs73326879	1.00[EUR][1000 genomes]
rs73328805	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73328806	1.00[AMR][1000 genomes]
rs73328813	1.00[AMR][1000 genomes]
rs7912065	1.00[EUR][1000 genomes]
rs7919755	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532232	chr10:98360775-99141797	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1045553	chr10:98944397-99122203	Strong transcription Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv540750	chr10:98944397-99122203	Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv831952	chr10:98998344-99145924	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv895914	chr10:99006083-99131676	Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
6	nsv825533	chr10:99070570-99115599	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
7	nsv825534	chr10:99081505-99115599	Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99080600-99091200	Weak transcription	HMEC	breast
2	chr10:99080800-99089800	Weak transcription	Dnd41	blood
3	chr10:99081200-99088000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr10:99081200-99091200	Weak transcription	Psoas Muscle	Psoas
5	chr10:99081200-99092600	Weak transcription	Aorta	Aorta
6	chr10:99081400-99088200	Weak transcription	Lung	lung
7	chr10:99081400-99088400	Weak transcription	Right Atrium	heart
8	chr10:99081400-99088800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr10:99081400-99089000	Weak transcription	Ovary	ovary
10	chr10:99081400-99089800	Weak transcription	Gastric	stomach
11	chr10:99081600-99087800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr10:99081600-99088400	Weak transcription	Rectal Smooth Muscle	rectum
13	chr10:99081600-99089000	Weak transcription	Esophagus	oesophagus
14	chr10:99081600-99091000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr10:99081600-99091600	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr10:99081600-99091600	Weak transcription	Fetal Kidney	kidney
17	chr10:99081600-99091600	Weak transcription	HSMMtube	muscle
18	chr10:99081800-99087800	Weak transcription	Left Ventricle	heart
19	chr10:99081800-99087800	Weak transcription	Thymus	Thymus
20	chr10:99081800-99088400	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr10:99081800-99088600	Weak transcription	Colon Smooth Muscle	Colon
22	chr10:99081800-99091000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr10:99081800-99091000	Weak transcription	HUVEC	blood vessel
24	chr10:99081800-99091200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr10:99081800-99091200	Weak transcription	Small Intestine	intestine
26	chr10:99081800-99091200	Weak transcription	HSMM	muscle
27	chr10:99081800-99091800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr10:99081800-99092000	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr10:99081800-99092600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr10:99082000-99087800	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr10:99082000-99088400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr10:99082000-99089800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr10:99082000-99089800	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr10:99082000-99091000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
35	chr10:99082000-99091000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
36	chr10:99082000-99091200	Weak transcription	Placenta	Placenta
37	chr10:99082200-99087800	Weak transcription	Primary T cells from cord blood	blood
38	chr10:99082200-99088600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
39	chr10:99082200-99088800	Weak transcription	Primary T helper cells fromperipheralblood	blood
40	chr10:99082200-99091200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr10:99082200-99091600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr10:99082400-99087800	Weak transcription	Brain Hippocampus Middle	brain
43	chr10:99082400-99088200	Weak transcription	Primary B cells from peripheral blood	blood
44	chr10:99082400-99088200	Weak transcription	Spleen	Spleen
45	chr10:99082400-99088400	Weak transcription	Primary hematopoietic stem cells	blood
46	chr10:99082400-99088400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr10:99082400-99088400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr10:99082400-99088600	Weak transcription	H1 Cell Line	embryonic stem cell
49	chr10:99082400-99088600	Weak transcription	Brain Angular Gyrus	brain
50	chr10:99082400-99088800	Weak transcription	Skeletal Muscle Female	skeletal muscle

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