Variant report

Variant	rs73328806
Chromosome Location	chr10:99091996-99091997
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:12)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:12 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:99091645-99092141	Hela-S3	cervix:	n/a	n/a
2	ESRRA	chr10:99091641-99094073	GM12878	blood:	n/a	n/a
3	CHD1	chr10:99091626-99095332	IMR90	lung:	n/a	chr10:99094876-99094886
4	POLR2A	chr10:99091696-99092037	K562	blood:	n/a	n/a
5	POLR2A	chr10:99091865-99092097	K562	blood:	n/a	n/a
6	BACH1	chr10:99091775-99092235	K562	blood:	n/a	n/a
7	POLR2A	chr10:99091605-99092063	MCF10A-Er-Src	breast:	n/a	n/a
8	POLR2A	chr10:99091820-99092002	A549	lung:	n/a	n/a
9	POLR2A	chr10:99090879-99092231	H1-hESC	embryonic stem cell:	n/a	n/a
10	POLR2A	chr10:99091687-99093824	HepG2	liver:	n/a	n/a
11	POLR2A	chr10:99091987-99091996	Hela-S3	cervix:	n/a	n/a
12	POLR2A	chr10:99091939-99092078	H1-hESC	embryonic stem cell:	n/a	n/a

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:99089670..99092667-chr10:99113757..99116464,3	MCF-7	breast:
2	chr10:99050912..99053751-chr10:99091766..99095025,5	MCF-7	breast:
3	chr10:99090785..99094308-chr10:99157737..99162145,4	MCF-7	breast:
4	chr10:99091261..99093952-chr10:99104801..99106882,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000225850	TF binding region
ENSG00000052749	Chromatin interaction
ENSG00000213390	Chromatin interaction
ENSG00000231970	Chromatin interaction
ENSG00000269891	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs58575155	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59190388	1.00[AMR][1000 genomes]
rs7095780	1.00[AMR][1000 genomes]
rs73328805	1.00[AMR][1000 genomes]
rs73328813	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532232	chr10:98360775-99141797	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1045553	chr10:98944397-99122203	Strong transcription Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv540750	chr10:98944397-99122203	Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv831952	chr10:98998344-99145924	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv895914	chr10:99006083-99131676	Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
6	nsv825533	chr10:99070570-99115599	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
7	nsv825534	chr10:99081505-99115599	Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
8	esv15055	chr10:99091979-99092632	Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99081200-99092600	Weak transcription	Aorta	Aorta
2	chr10:99081800-99092000	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr10:99081800-99092600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:99086800-99093200	Transcr. at gene 5' and 3'	Primary neutrophils fromperipheralblood	blood
5	chr10:99088400-99093400	Transcr. at gene 5' and 3'	Monocytes-CD14+_RO01746	blood
6	chr10:99089000-99092400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr10:99089200-99092400	Weak transcription	GM12878-XiMat	blood
8	chr10:99089400-99092000	Enhancers	Left Ventricle	heart
9	chr10:99089800-99092200	Enhancers	Gastric	stomach
10	chr10:99090000-99092000	Transcr. at gene 5' and 3'	Primary monocytes fromperipheralblood	blood
11	chr10:99090000-99092400	Genic enhancers	Primary B cells from peripheral blood	blood
12	chr10:99090600-99092600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr10:99090800-99092000	Enhancers	Spleen	Spleen
14	chr10:99090800-99092400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
15	chr10:99090800-99095000	Active TSS	HUES64 Cell Line	embryonic stem cell
16	chr10:99091000-99092000	Enhancers	Primary T killer memory cells from peripheral blood	blood
17	chr10:99091000-99092200	Transcr. at gene 5' and 3'	HUES48 Cell Line	embryonic stem cell
18	chr10:99091000-99092200	Enhancers	Brain Substantia Nigra	brain
19	chr10:99091000-99092200	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
20	chr10:99091000-99092200	Flanking Active TSS	Hela-S3	cervix
21	chr10:99091000-99092400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
22	chr10:99091000-99092400	Enhancers	Dnd41	blood
23	chr10:99091000-99092600	Enhancers	Primary T helper naive cells from peripheral blood	blood
24	chr10:99091000-99092600	Transcr. at gene 5' and 3'	Primary mononuclear cells fromperipheralblood	Blood
25	chr10:99091000-99092600	Flanking Active TSS	Stomach Smooth Muscle	stomach
26	chr10:99091000-99092800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
27	chr10:99091000-99092800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr10:99091200-99092000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr10:99091200-99092000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
30	chr10:99091200-99092000	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr10:99091200-99092000	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr10:99091200-99092000	Flanking Active TSS	Liver	Liver
33	chr10:99091200-99092000	Genic enhancers	Esophagus	oesophagus
34	chr10:99091200-99092000	Enhancers	Placenta	Placenta
35	chr10:99091200-99092000	Enhancers	Psoas Muscle	Psoas
36	chr10:99091200-99092200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr10:99091200-99092200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr10:99091200-99092200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr10:99091200-99092200	Enhancers	Fetal Muscle Trunk	muscle
40	chr10:99091200-99092400	Enhancers	Brain Cingulate Gyrus	brain
41	chr10:99091200-99092400	Enhancers	Placenta Amnion	Placenta Amnion
42	chr10:99091200-99092400	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
43	chr10:99091200-99093200	Active TSS	iPS-15b Cell Line	embryonic stem cell
44	chr10:99091200-99093600	Flanking Active TSS	Brain Germinal Matrix	brain
45	chr10:99091200-99093800	Flanking Active TSS	Adipose Nuclei	Adipose
46	chr10:99091400-99092000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr10:99091400-99092000	Flanking Active TSS	Fetal Brain Female	brain
48	chr10:99091400-99092000	Flanking Active TSS	Fetal Intestine Small	intestine
49	chr10:99091400-99092200	Enhancers	Fetal Lung	lung
50	chr10:99091400-99092200	Enhancers	Fetal Thymus	thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links