Variant report

Variant	rs28988616
Chromosome Location	chr14:77738809-77738810
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs28909974	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28909975	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57425664	1.00[AMR][1000 genomes]
rs59725094	0.86[AFR][1000 genomes]
rs61555950	1.00[AMR][1000 genomes]
rs74062794	1.00[AMR][1000 genomes]
rs74062879	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74063865	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431017	chr14:76938089-77854647	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	107 gene(s)	inside rSNPs	diseases
2	nsv1361	chr14:77707417-77753024	Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
3	nsv902104	chr14:77720741-77756321	Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:77737400-77743000	Weak transcription	Dnd41	blood
2	chr14:77737800-77742800	Weak transcription	Gastric	stomach
3	chr14:77738000-77742600	Weak transcription	Pancreas	Pancrea
4	chr14:77738000-77742600	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr14:77738200-77742400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr14:77738800-77741800	Weak transcription	Brain Germinal Matrix	brain
7	chr14:77738800-77743400	Weak transcription	A549	lung
8	chr14:77738800-77749600	Weak transcription	NHDF-Ad	bronchial

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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