Variant report

Variant	rs2898983
Chromosome Location	chr15:40319517-40319518
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:40318814..40321249-chr15:40324254..40326485,2	K562	blood:
2	chr15:40314138..40317117-chr15:40317356..40320550,4	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1017842	1.00[AMR][1000 genomes]
rs12050584	1.00[AMR][1000 genomes]
rs2412455	1.00[AMR][1000 genomes]
rs2412461	1.00[AMR][1000 genomes]
rs2640644	1.00[AMR][1000 genomes]
rs2917838	1.00[AMR][1000 genomes]
rs2934195	1.00[AMR][1000 genomes]
rs472530	1.00[AMR][1000 genomes]
rs503775	1.00[AMR][1000 genomes]
rs508280	1.00[AMR][1000 genomes]
rs509966	1.00[AMR][1000 genomes]
rs514394	1.00[AMR][1000 genomes]
rs535400	1.00[AMR][1000 genomes]
rs544070	1.00[AMR][1000 genomes]
rs571256	1.00[AMR][1000 genomes]
rs578429	1.00[AMR][1000 genomes]
rs58030495	1.00[AMR][1000 genomes]
rs581167	1.00[AMR][1000 genomes]
rs61523420	1.00[AMR][1000 genomes]
rs7165452	1.00[AMR][1000 genomes]
rs7173708	1.00[AMR][1000 genomes]
rs7174465	1.00[AMR][1000 genomes]
rs73389528	1.00[AMR][1000 genomes]
rs8042413	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530816	chr15:40003136-40586792	Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	nsv428635	chr15:40274500-40436293	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40228200-40323800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr15:40296400-40325200	Weak transcription	Hela-S3	cervix
3	chr15:40301000-40322000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr15:40303000-40329600	Strong transcription	Liver	Liver
5	chr15:40303800-40320600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr15:40305200-40330200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr15:40306800-40319600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr15:40306800-40328800	Weak transcription	Stomach Mucosa	stomach
9	chr15:40306800-40329800	Strong transcription	Osteobl	bone
10	chr15:40307000-40329000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr15:40307000-40329400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr15:40307200-40329600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr15:40307400-40326800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr15:40307400-40329600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr15:40307600-40326200	Strong transcription	HSMM	muscle
16	chr15:40307600-40329200	Strong transcription	H9 Cell Line	embryonic stem cell
17	chr15:40307600-40329200	Strong transcription	HMEC	breast
18	chr15:40307800-40329600	Strong transcription	NH-A	brain
19	chr15:40307800-40330000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
20	chr15:40308000-40329000	Strong transcription	HepG2	liver
21	chr15:40308000-40329600	Strong transcription	HUES64 Cell Line	embryonic stem cell
22	chr15:40308000-40329800	Strong transcription	NHDF-Ad	bronchial
23	chr15:40308000-40330000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
24	chr15:40308200-40329600	Strong transcription	H1 Cell Line	embryonic stem cell
25	chr15:40308600-40328800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr15:40308600-40330000	Strong transcription	HUES6 Cell Line	embryonic stem cell
27	chr15:40308800-40330000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr15:40309200-40329600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr15:40310000-40326400	Strong transcription	Muscle Satellite Cultured Cells	--
30	chr15:40310000-40329200	Strong transcription	Skeletal Muscle Female	skeletal muscle
31	chr15:40310000-40329400	Strong transcription	Duodenum Smooth Muscle	Duodenum
32	chr15:40310000-40330000	Strong transcription	Rectal Mucosa Donor 31	rectum
33	chr15:40310600-40319600	Strong transcription	Fetal Lung	lung
34	chr15:40310600-40328800	Strong transcription	Primary T helper cells fromperipheralblood	blood
35	chr15:40310600-40329800	Strong transcription	Primary neutrophils fromperipheralblood	blood
36	chr15:40310600-40330000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr15:40310600-40330000	Strong transcription	Rectal Mucosa Donor 29	rectum
38	chr15:40311200-40319600	Strong transcription	Cortex derived primary cultured neurospheres	brain
39	chr15:40311200-40320200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr15:40312400-40324400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
41	chr15:40312400-40324400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
42	chr15:40313400-40320800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr15:40313600-40329200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr15:40313600-40329800	Strong transcription	HUES48 Cell Line	embryonic stem cell
45	chr15:40313800-40324200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
46	chr15:40313800-40326200	Weak transcription	Small Intestine	intestine
47	chr15:40314000-40324600	Weak transcription	Fetal Brain Male	brain
48	chr15:40314000-40329600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr15:40314000-40330400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr15:40314200-40320400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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