Variant report

Variant	rs2899061
Chromosome Location	chr15:43045580-43045581
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:43021475..43023961-chr15:43043759..43045858,2	K562	blood:
2	chr15:43044008..43046393-chr15:43047773..43049596,2	K562	blood:
3	chr15:43038879..43041116-chr15:43044184..43047374,3	K562	blood:

Variant related genes	Relation type
ENSG00000140326	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs7161810	1.00[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528725	chr15:42755555-43104406	Weak transcription Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv427959	chr15:42931181-43207353	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv457122	chr15:42948862-43062548	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv569238	chr15:42948862-43062548	Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv977054	chr15:43015821-43171355	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:43029400-43051200	Weak transcription	Spleen	Spleen
2	chr15:43029800-43047600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr15:43029800-43047800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr15:43029800-43050800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr15:43029800-43051200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr15:43029800-43051200	Weak transcription	Esophagus	oesophagus
7	chr15:43029800-43051200	Weak transcription	Gastric	stomach
8	chr15:43029800-43051400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr15:43029800-43071000	Weak transcription	Pancreas	Pancrea
10	chr15:43030000-43047800	Weak transcription	HMEC	breast
11	chr15:43030000-43051000	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr15:43030000-43051400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr15:43030000-43051600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr15:43030000-43053200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr15:43030000-43053200	Weak transcription	Rectal Smooth Muscle	rectum
16	chr15:43030000-43053800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr15:43030000-43066200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr15:43030000-43067200	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr15:43030000-43093600	Weak transcription	Colonic Mucosa	Colon
20	chr15:43030200-43052800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr15:43038200-43055200	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr15:43038400-43045600	Weak transcription	HUVEC	blood vessel
23	chr15:43038400-43051200	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr15:43038400-43051200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr15:43038400-43067400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr15:43041200-43045800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr15:43041200-43046000	Strong transcription	Primary T cells from cord blood	blood
28	chr15:43041200-43046200	Strong transcription	Primary B cells from cord blood	blood
29	chr15:43041400-43046200	Strong transcription	Monocytes-CD14+_RO01746	blood
30	chr15:43041600-43045800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr15:43041600-43046000	Strong transcription	Fetal Muscle Leg	muscle
32	chr15:43041800-43051000	Weak transcription	Psoas Muscle	Psoas
33	chr15:43042000-43045600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr15:43042600-43045800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr15:43042800-43046000	Strong transcription	Primary T cells fromperipheralblood	blood
36	chr15:43043000-43046000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr15:43043000-43046000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr15:43043000-43046000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr15:43043000-43046600	Weak transcription	Small Intestine	intestine
40	chr15:43043200-43045800	Strong transcription	Left Ventricle	heart
41	chr15:43043200-43046400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
42	chr15:43043200-43046600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr15:43043400-43045800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr15:43043400-43045800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
45	chr15:43043400-43046000	Strong transcription	Primary B cells from peripheral blood	blood
46	chr15:43043400-43046000	Strong transcription	Primary T helper cells PMA-I stimulated	--
47	chr15:43043400-43046000	Strong transcription	Brain Anterior Caudate	brain
48	chr15:43043400-43046000	Strong transcription	Skeletal Muscle Female	skeletal muscle
49	chr15:43043400-43046000	Strong transcription	Dnd41	blood
50	chr15:43043600-43045600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links