Variant report

Variant	rs289936
Chromosome Location	chr2:152013035-152013036
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs289881	1.00[AMR][1000 genomes]
rs289884	1.00[AMR][1000 genomes]
rs289885	1.00[AMR][1000 genomes]
rs289889	1.00[AMR][1000 genomes]
rs289917	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs289925	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs289930	1.00[AMR][1000 genomes]
rs4664269	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525350	chr2:151711700-152044794	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv523849	chr2:151718133-152143524	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	esv3693426	chr2:151725792-152295862	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv1002140	chr2:151833257-152054910	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv834417	chr2:151980473-152154950	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:152007200-152018000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr2:152008400-152013400	Weak transcription	Fetal Lung	lung
3	chr2:152012800-152013200	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr2:152012800-152013200	Enhancers	HSMM	muscle
5	chr2:152012800-152013600	Enhancers	Muscle Satellite Cultured Cells	--
6	chr2:152012800-152013800	Enhancers	NH-A	brain
7	chr2:152013000-152013200	Enhancers	HMEC	breast
8	chr2:152013000-152013400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr2:152013000-152013400	Flanking Active TSS	Osteobl	bone

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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