Variant report

Variant	rs2900753
Chromosome Location	chr11:32491339-32491340
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10835913	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10835914	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10835915	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10835921	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10835922	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10835923	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11031787	0.96[EUR][1000 genomes]
rs11031788	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11031790	0.82[EUR][1000 genomes]
rs11031810	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12222697	0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12224136	0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1799925	0.82[EUR][1000 genomes]
rs2418912	0.82[EUR][1000 genomes]
rs2418932	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs34163689	0.95[EUR][1000 genomes]
rs3858449	0.82[EUR][1000 genomes]
rs3858451	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs5030141	0.82[EUR][1000 genomes]
rs59518979	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61889251	0.82[EUR][1000 genomes]
rs61889255	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61889256	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61891673	0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61891674	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs61891675	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61891678	0.99[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832108	chr11:32395937-32560583	Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv2753303	chr11:32447324-32494924	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv1733843	chr11:32491329-32491339	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:32488400-32499200	Weak transcription	K562	blood
2	chr11:32489600-32491400	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr11:32490200-32491600	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr11:32490200-32491600	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr11:32491000-32493600	Weak transcription	Dnd41	blood

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