Variant report

Variant	rs2906269
Chromosome Location	chr7:70883858-70883859
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11972101	0.86[AFR][1000 genomes]
rs11981404	0.86[AFR][1000 genomes]
rs11981510	0.86[AFR][1000 genomes]
rs11981830	0.81[AFR][1000 genomes]
rs4425646	0.84[AFR][1000 genomes]
rs73362092	0.85[AFR][1000 genomes]
rs73362094	0.85[AFR][1000 genomes]
rs73362101	0.85[AFR][1000 genomes]
rs73363709	0.85[AFR][1000 genomes]
rs73363712	0.86[AFR][1000 genomes]
rs73363713	0.82[AFR][1000 genomes]
rs73363716	0.85[AFR][1000 genomes]
rs73363721	0.86[AFR][1000 genomes]
rs73363724	0.86[AFR][1000 genomes]
rs73363728	0.86[AFR][1000 genomes]
rs73363730	0.86[AFR][1000 genomes]
rs73363732	0.81[AFR][1000 genomes]
rs73363734	0.86[AFR][1000 genomes]
rs73363739	0.84[AFR][1000 genomes]
rs73363743	0.81[AFR][1000 genomes]
rs73363744	0.86[AFR][1000 genomes]
rs73363746	0.86[AFR][1000 genomes]
rs73363747	0.86[AFR][1000 genomes]
rs73363749	0.81[AFR][1000 genomes]
rs73363751	0.86[AFR][1000 genomes]
rs73363755	0.86[AFR][1000 genomes]
rs73363757	0.86[AFR][1000 genomes]
rs73363773	0.81[AFR][1000 genomes]
rs73365673	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70853400-70885800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr7:70868200-70892400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr7:70874200-70892600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr7:70874800-70889000	Weak transcription	HSMMtube	muscle
5	chr7:70878200-70885600	Weak transcription	Fetal Stomach	stomach
6	chr7:70878600-70885400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr7:70879400-70886200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr7:70879400-70899000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr7:70880000-70891000	Weak transcription	Right Atrium	heart
10	chr7:70880000-70897600	Weak transcription	Right Ventricle	heart
11	chr7:70880200-70888800	Weak transcription	Left Ventricle	heart
12	chr7:70880600-70884600	Strong transcription	HUES6 Cell Line	embryonic stem cell
13	chr7:70880600-70888000	Strong transcription	HUES64 Cell Line	embryonic stem cell
14	chr7:70880600-70888000	Strong transcription	Fetal Muscle Trunk	muscle
15	chr7:70880800-70889200	Strong transcription	H1 Cell Line	embryonic stem cell
16	chr7:70880800-70899200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr7:70881000-70887600	Strong transcription	HUES48 Cell Line	embryonic stem cell
18	chr7:70881000-70901200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr7:70881200-70887000	Weak transcription	Pancreas	Pancrea
20	chr7:70881200-70888800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr7:70881800-70887000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr7:70882000-70884000	Strong transcription	H9 Cell Line	embryonic stem cell
23	chr7:70882000-70884400	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr7:70882200-70884400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr7:70883200-70886400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr7:70883400-70889400	Weak transcription	Brain Angular Gyrus	brain
27	chr7:70883600-70885600	Weak transcription	Aorta	Aorta
28	chr7:70883600-70885800	Weak transcription	Ovary	ovary
29	chr7:70883600-70886000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr7:70883600-70889000	Weak transcription	Fetal Lung	lung
31	chr7:70883800-70885000	Weak transcription	Fetal Muscle Leg	muscle
32	chr7:70883800-70885600	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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