Variant report

Variant	rs73363712
Chromosome Location	chr7:70879280-70879281
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs11972101	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11979445	0.85[AFR][1000 genomes]
rs11979470	0.86[AFR][1000 genomes]
rs11981404	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11981510	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11981801	0.86[AFR][1000 genomes]
rs11981830	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11984058	0.83[AFR][1000 genomes]
rs2906267	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2906269	0.86[AFR][1000 genomes]
rs4286834	1.00[AMR][1000 genomes]
rs4392778	1.00[AMR][1000 genomes]
rs4394286	1.00[AMR][1000 genomes]
rs4425646	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4493801	1.00[AMR][1000 genomes]
rs57276588	1.00[AMR][1000 genomes]
rs58023981	0.88[AFR][1000 genomes]
rs59343577	1.00[AMR][1000 genomes]
rs60739260	0.84[AFR][1000 genomes]
rs61737661	0.87[AFR][1000 genomes]
rs73360197	0.86[AFR][1000 genomes]
rs73360199	0.85[AFR][1000 genomes]
rs73362010	0.88[AFR][1000 genomes]
rs73362011	0.88[AFR][1000 genomes]
rs73362012	0.86[AFR][1000 genomes]
rs73362014	0.88[AFR][1000 genomes]
rs73362015	0.88[AFR][1000 genomes]
rs73362022	0.86[AFR][1000 genomes]
rs73362023	0.88[AFR][1000 genomes]
rs73362026	0.88[AFR][1000 genomes]
rs73362084	0.88[AFR][1000 genomes]
rs73362085	0.92[AFR][1000 genomes]
rs73362092	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73362094	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73362101	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73363706	1.00[AMR][1000 genomes]
rs73363709	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73363713	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73363716	0.98[AFR][1000 genomes]
rs73363721	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73363724	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73363728	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73363730	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73363732	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73363734	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73363739	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73363743	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73363744	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73363746	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73363747	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73363749	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73363751	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73363755	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73363757	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73363773	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73363788	1.00[AMR][1000 genomes]
rs73365683	1.00[AMR][1000 genomes]
rs73367503	1.00[AMR][1000 genomes]
rs73367504	1.00[AMR][1000 genomes]
rs73367508	1.00[AMR][1000 genomes]
rs73367518	1.00[AMR][1000 genomes]
rs73367523	1.00[AMR][1000 genomes]
rs73367526	1.00[AMR][1000 genomes]
rs73367533	1.00[AMR][1000 genomes]
rs7456388	1.00[AMR][1000 genomes]
rs9942637	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70853400-70885800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr7:70867600-70881000	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr7:70868200-70881800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr7:70868200-70892400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr7:70868800-70882200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr7:70869200-70880800	Weak transcription	Ovary	ovary
7	chr7:70870200-70880600	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr7:70870400-70880600	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr7:70870400-70880800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr7:70870400-70880800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr7:70873800-70879400	Weak transcription	Fetal Heart	heart
12	chr7:70874200-70892600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr7:70874600-70880800	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr7:70874800-70889000	Weak transcription	HSMMtube	muscle
15	chr7:70875000-70879400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr7:70875000-70880600	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr7:70875000-70880600	Weak transcription	Fetal Muscle Trunk	muscle
18	chr7:70876000-70882600	Weak transcription	Fetal Lung	lung
19	chr7:70876400-70879800	Weak transcription	Right Atrium	heart
20	chr7:70877000-70881200	Weak transcription	Fetal Muscle Leg	muscle
21	chr7:70878200-70885600	Weak transcription	Fetal Stomach	stomach
22	chr7:70878600-70885400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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