The 2.0 version of rSNPBase

Variant report

Variant rs2906816
Chromosome Location chr5:145397459-145397460
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:36 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:145362200-145399200 Weak transcription Placenta Amnion Placenta Amnion
2 chr5:145362600-145404400 Weak transcription Skeletal Muscle Male skeletal muscle
3 chr5:145373200-145406800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
4 chr5:145373400-145408800 Weak transcription Aorta Aorta
5 chr5:145373400-145428400 Weak transcription Fetal Stomach stomach
6 chr5:145379400-145412200 Weak transcription Right Ventricle heart
7 chr5:145385400-145398400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
8 chr5:145386800-145405400 Weak transcription Small Intestine intestine
9 chr5:145387800-145404200 Weak transcription HepG2 liver
10 chr5:145388000-145404400 Weak transcription Stomach Mucosa stomach
11 chr5:145392200-145398000 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
12 chr5:145392200-145398000 Strong transcription NHEK skin
13 chr5:145392200-145404600 Weak transcription Hela-S3 cervix
14 chr5:145392600-145397800 Strong transcription HMEC breast
15 chr5:145392600-145398000 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
16 chr5:145392600-145398600 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
17 chr5:145392800-145406600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
18 chr5:145393800-145406600 Weak transcription Esophagus oesophagus
19 chr5:145393800-145408000 Weak transcription Gastric stomach
20 chr5:145394200-145407200 Weak transcription NH-A brain
21 chr5:145394400-145399600 Weak transcription Psoas Muscle Psoas
22 chr5:145394600-145399800 Weak transcription Skeletal Muscle Female skeletal muscle
23 chr5:145394600-145404800 Weak transcription Colonic Mucosa Colon
24 chr5:145395000-145404600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
25 chr5:145396400-145397600 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
26 chr5:145396400-145404800 Weak transcription Pancreas Pancrea
27 chr5:145396600-145397600 Strong transcription Fetal Intestine Small intestine
28 chr5:145396600-145398000 Strong transcription Breast Myoepithelial Primary Cells Breast
29 chr5:145397200-145399800 Weak transcription Fetal Intestine Large intestine
30 chr5:145397200-145401800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
31 chr5:145397200-145404200 Weak transcription Rectal Mucosa Donor 29 rectum
32 chr5:145397200-145418800 Weak transcription Liver Liver
33 chr5:145397400-145399600 Weak transcription Rectal Mucosa Donor 31 rectum
34 chr5:145397400-145404200 Weak transcription Duodenum Mucosa Duodenum
35 chr5:145397400-145404800 Weak transcription Left Ventricle heart
36 chr5:145397400-145404800 Weak transcription Sigmoid Colon Sigmoid Colon

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Last update: Aug 31, 2015