Variant report

Variant rs2906823
Chromosome Location chr5:145406181-145406182
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:48 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:145373200-145406800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
2 chr5:145373400-145408800 Weak transcription Aorta Aorta
3 chr5:145373400-145428400 Weak transcription Fetal Stomach stomach
4 chr5:145379400-145412200 Weak transcription Right Ventricle heart
5 chr5:145392800-145406600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
6 chr5:145393800-145406600 Weak transcription Esophagus oesophagus
7 chr5:145393800-145408000 Weak transcription Gastric stomach
8 chr5:145394200-145407200 Weak transcription NH-A brain
9 chr5:145397200-145418800 Weak transcription Liver Liver
10 chr5:145400600-145406400 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
11 chr5:145403800-145408400 Enhancers iPS-18 Cell Line embryonic stem cell
12 chr5:145404200-145406400 Enhancers HepG2 liver
13 chr5:145404200-145407000 Enhancers Rectal Mucosa Donor 29 rectum
14 chr5:145404200-145408200 Enhancers Rectal Mucosa Donor 31 rectum
15 chr5:145404400-145406800 Enhancers Fetal Intestine Small intestine
16 chr5:145404400-145407000 Enhancers Stomach Mucosa stomach
17 chr5:145404400-145408200 Enhancers Fetal Intestine Large intestine
18 chr5:145404600-145406200 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
19 chr5:145404600-145406800 Enhancers Hela-S3 cervix
20 chr5:145404600-145407600 Enhancers HUES6 Cell Line embryonic stem cell
21 chr5:145404600-145407800 Enhancers HUES64 Cell Line embryonic stem cell
22 chr5:145404800-145407400 Enhancers iPS-15b Cell Line embryonic stem cell
23 chr5:145404800-145407600 Enhancers ES-I3 Cell Line embryonic stem cell
24 chr5:145404800-145408200 Enhancers Sigmoid Colon Sigmoid Colon
25 chr5:145404800-145408600 Enhancers H1 Cell Line embryonic stem cell
26 chr5:145405000-145416800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
27 chr5:145405200-145406200 Weak transcription Breast Myoepithelial Primary Cells Breast
28 chr5:145405200-145406400 Weak transcription Fetal Heart heart
29 chr5:145405400-145406200 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
30 chr5:145405400-145406400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
31 chr5:145405400-145406800 Weak transcription A549 lung
32 chr5:145405400-145408400 Enhancers Small Intestine intestine
33 chr5:145405600-145406600 Weak transcription H9 Cell Line embryonic stem cell
34 chr5:145405600-145406600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
35 chr5:145405600-145406600 Weak transcription HMEC breast
36 chr5:145405600-145406800 Weak transcription Colonic Mucosa Colon
37 chr5:145405600-145408200 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
38 chr5:145405600-145410600 Weak transcription Left Ventricle heart
39 chr5:145405600-145412200 Weak transcription Pancreas Pancrea
40 chr5:145405800-145407000 Weak transcription Fetal Kidney kidney
41 chr5:145405800-145407000 Genic enhancers NHEK skin
42 chr5:145405800-145408400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
43 chr5:145406000-145406400 Flanking Active TSS HUES48 Cell Line embryonic stem cell
44 chr5:145406000-145406800 Flanking Active TSS iPS-20b Cell Line embryonic stem cell
45 chr5:145406000-145406800 Enhancers Duodenum Mucosa Duodenum
46 chr5:145406000-145406800 Weak transcription Fetal Adrenal Gland Adrenal Gland
47 chr5:145406000-145407800 Enhancers ES-WA7 Cell Line embryonic stem cell
48 chr5:145406000-145408600 Genic enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast

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