Variant report

Variant	rs2908452
Chromosome Location	chr12:8904132-8904133
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs2043942	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs2159890	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2969088	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2969093	0.94[CEU][hapmap];0.82[CHB][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2969095	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2969098	0.83[EUR][1000 genomes]
rs61919244	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7975731	0.84[AMR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2908452	KLRC3	cis	cerebellum	SCAN
rs2908452	KLRD1	cis	cerebellum	SCAN

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:8852800-8908600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr12:8853200-8934000	Weak transcription	K562	blood
3	chr12:8862800-8905400	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr12:8862800-8908000	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr12:8868200-8905400	Weak transcription	Right Ventricle	heart
6	chr12:8875800-8933200	Weak transcription	Fetal Kidney	kidney
7	chr12:8878400-8904400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr12:8878400-8923600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr12:8878400-8937200	Weak transcription	Brain Cingulate Gyrus	brain
10	chr12:8882200-8904800	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr12:8882200-8938400	Weak transcription	Spleen	Spleen
12	chr12:8882200-8939400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr12:8882400-8904200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr12:8882400-8905800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr12:8883200-8904600	Weak transcription	Fetal Brain Female	brain
16	chr12:8883400-8938800	Weak transcription	Primary B cells from cord blood	blood
17	chr12:8886600-8912200	Weak transcription	Small Intestine	intestine
18	chr12:8888800-8932000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr12:8889200-8917400	Weak transcription	Fetal Heart	heart
20	chr12:8889200-8935800	Weak transcription	A549	lung
21	chr12:8889200-8936600	Weak transcription	Brain Angular Gyrus	brain
22	chr12:8890400-8911000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr12:8890600-8937000	Weak transcription	Colon Smooth Muscle	Colon
24	chr12:8893600-8905000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr12:8893800-8911000	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr12:8894200-8937800	Weak transcription	Esophagus	oesophagus
27	chr12:8894400-8907200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr12:8894400-8920800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr12:8895400-8905400	Weak transcription	Rectal Smooth Muscle	rectum
30	chr12:8895400-8923200	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr12:8895400-8927600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr12:8895600-8904400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr12:8895600-8904600	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr12:8895600-8904600	Weak transcription	Osteobl	bone
35	chr12:8895600-8904800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr12:8895600-8904800	Weak transcription	Aorta	Aorta
37	chr12:8895600-8904800	Weak transcription	Lung	lung
38	chr12:8895600-8906200	Weak transcription	Left Ventricle	heart
39	chr12:8895600-8906400	Weak transcription	HSMM	muscle
40	chr12:8895600-8909000	Weak transcription	NHDF-Ad	bronchial
41	chr12:8895600-8911200	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr12:8895600-8935200	Weak transcription	HMEC	breast
43	chr12:8895600-8937800	Weak transcription	HSMMtube	muscle
44	chr12:8895600-8941200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr12:8895800-8904400	Weak transcription	Thymus	Thymus
46	chr12:8895800-8904800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr12:8895800-8906200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr12:8896000-8908000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr12:8896600-8905600	Weak transcription	Duodenum Mucosa	Duodenum
50	chr12:8896800-8904200	Weak transcription	Adipose Nuclei	Adipose

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