Variant report

Variant	rs2159890
Chromosome Location	chr12:8951810-8951811
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs2043942	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs2908452	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2908458	0.81[ASN][1000 genomes]
rs2908459	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2969088	0.86[EUR][1000 genomes]
rs2969093	1.00[CEU][hapmap];0.82[CHB][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2969095	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2969098	0.92[EUR][1000 genomes]
rs2969099	0.81[EUR][1000 genomes]
rs2969100	0.81[ASN][1000 genomes]
rs4405367	0.82[EUR][1000 genomes]
rs61919244	0.81[EUR][1000 genomes]
rs7311130	0.86[EUR][1000 genomes]
rs7959171	0.81[AMR][1000 genomes]
rs7975731	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34096	chr12:8927520-8968810	Genic enhancers Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:8945200-8958000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr12:8947600-8961800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr12:8947800-8955600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr12:8947800-8958200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr12:8949000-8962600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr12:8950000-8958200	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr12:8950000-8958800	Weak transcription	HUES64 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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