Variant report

Variant	rs7311130
Chromosome Location	chr12:8948830-8948831
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs2159890	0.86[EUR][1000 genomes]
rs2908459	0.83[EUR][1000 genomes]
rs2969098	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34096	chr12:8927520-8968810	Genic enhancers Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:8944000-8950200	Weak transcription	Right Atrium	heart
2	chr12:8945200-8958000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr12:8945800-8949800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr12:8947000-8949600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr12:8947000-8950600	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr12:8947200-8950400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr12:8947600-8949400	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr12:8947600-8961800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr12:8947800-8949400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr12:8947800-8955600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr12:8947800-8958200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr12:8948600-8949000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr12:8948600-8949000	Strong transcription	HUES48 Cell Line	embryonic stem cell
14	chr12:8948600-8949000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr12:8948600-8949800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
16	chr12:8948600-8950000	Strong transcription	HUES64 Cell Line	embryonic stem cell
17	chr12:8948600-8950000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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