Variant report

Variant	rs4405367
Chromosome Location	chr12:8941146-8941147
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs2159890	0.82[EUR][1000 genomes]
rs2908458	0.83[EUR][1000 genomes]
rs2908459	0.82[EUR][1000 genomes]
rs2969098	0.83[EUR][1000 genomes]
rs2969099	0.80[EUR][1000 genomes]
rs2969100	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34096	chr12:8927520-8968810	Genic enhancers Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:8895600-8941200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr12:8899400-8941200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr12:8903000-8941200	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr12:8905800-8941200	Weak transcription	Rectal Smooth Muscle	rectum
5	chr12:8906000-8941200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr12:8906800-8941200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr12:8908600-8941200	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr12:8908600-8941200	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr12:8926400-8941200	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr12:8926800-8941400	Weak transcription	Primary T cells from cord blood	blood
11	chr12:8929000-8941400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr12:8930800-8941200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr12:8936200-8941200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr12:8936200-8941200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr12:8936200-8941200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr12:8936200-8941200	Weak transcription	HUVEC	blood vessel
17	chr12:8936200-8941200	Weak transcription	Osteobl	bone
18	chr12:8936400-8941200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr12:8936400-8941200	Weak transcription	Fetal Thymus	thymus
20	chr12:8936600-8941200	Weak transcription	Adipose Nuclei	Adipose
21	chr12:8936800-8941200	Weak transcription	Fetal Muscle Trunk	muscle
22	chr12:8937000-8941200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr12:8937000-8941200	Weak transcription	Fetal Muscle Leg	muscle
24	chr12:8937200-8941200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr12:8939600-8941200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr12:8941000-8942200	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr12:8941000-8942200	Active TSS	HUES6 Cell Line	embryonic stem cell
28	chr12:8941000-8942800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr12:8941000-8943000	Active TSS	HUES48 Cell Line	embryonic stem cell
30	chr12:8941000-8943200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr12:8941000-8943200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr12:8941000-8943200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
33	chr12:8941000-8943400	Active TSS	ES-I3 Cell Line	embryonic stem cell
34	chr12:8941000-8943400	Active TSS	H1 Cell Line	embryonic stem cell
35	chr12:8941000-8943400	Active TSS	HUES64 Cell Line	embryonic stem cell
36	chr12:8941000-8943400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr12:8941000-8944400	Active TSS	H9 Cell Line	embryonic stem cell
38	chr12:8941000-8944400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr12:8941000-8944800	Active TSS	iPS-15b Cell Line	embryonic stem cell

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