Variant report

Variant	rs2969100
Chromosome Location	chr12:8943129-8943130
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs2159890	0.81[ASN][1000 genomes]
rs2908458	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2908459	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2969098	0.82[EUR][1000 genomes]
rs2969099	0.90[EUR][1000 genomes]
rs4405367	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34096	chr12:8927520-8968810	Genic enhancers Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:8941000-8943200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr12:8941000-8943200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr12:8941000-8943200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
4	chr12:8941000-8943400	Active TSS	ES-I3 Cell Line	embryonic stem cell
5	chr12:8941000-8943400	Active TSS	H1 Cell Line	embryonic stem cell
6	chr12:8941000-8943400	Active TSS	HUES64 Cell Line	embryonic stem cell
7	chr12:8941000-8943400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr12:8941000-8944400	Active TSS	H9 Cell Line	embryonic stem cell
9	chr12:8941000-8944400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr12:8941000-8944800	Active TSS	iPS-15b Cell Line	embryonic stem cell
11	chr12:8941200-8943200	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr12:8941200-8943400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr12:8941200-8943400	Active TSS	iPS-18 Cell Line	embryonic stem cell
14	chr12:8942200-8944000	Transcr. at gene 5' and 3'	HUES6 Cell Line	embryonic stem cell
15	chr12:8942600-8943200	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr12:8942600-8944600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr12:8942800-8943200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr12:8942800-8943600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr12:8943000-8947400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
20	chr12:8943000-8947800	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell

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