Variant report

Variant	rs2909300
Chromosome Location	chr9:73591749-73591750
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10511994	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11142653	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11142654	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11142655	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11142656	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12336234	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12341926	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12347831	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12350277	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12351323	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12351733	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13284434	0.80[ASN][1000 genomes]
rs13302269	0.81[ASN][1000 genomes]
rs1337020	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1362824	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1558923	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2039644	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2184851	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2909293	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2909294	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2909295	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2909296	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2993000	0.81[ASN][1000 genomes]
rs2993002	0.97[ASN][1000 genomes]
rs2993003	0.97[ASN][1000 genomes]
rs3009571	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3010437	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3010438	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3010439	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3010440	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34260617	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34653753	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35504246	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35806768	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs35851123	0.81[ASN][1000 genomes]
rs4442205	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62543204	0.85[ASN][1000 genomes]
rs62543208	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62543212	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6560170	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7021501	0.92[ASN][1000 genomes]
rs7022875	0.81[ASN][1000 genomes]
rs7039571	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7042956	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7043058	0.80[ASN][1000 genomes]
rs7046188	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7857794	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893441	chr9:73486034-73594114	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv430072	chr9:73509677-73640530	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv6558	chr9:73589091-73600375	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73591200-73591800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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