Variant report

Variant	rs35806768
Chromosome Location	chr9:73579361-73579362
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10511994	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12377705	0.84[ASN][1000 genomes]
rs13284434	0.85[ASN][1000 genomes]
rs13302269	0.86[ASN][1000 genomes]
rs1337020	0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2184851	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2909300	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2993000	0.86[ASN][1000 genomes]
rs2993002	0.97[ASN][1000 genomes]
rs2993003	0.97[ASN][1000 genomes]
rs3010440	0.81[AMR][1000 genomes]
rs35851123	0.86[ASN][1000 genomes]
rs62543204	0.90[ASN][1000 genomes]
rs7021501	0.92[ASN][1000 genomes]
rs7022875	0.86[ASN][1000 genomes]
rs7039571	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7043058	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893441	chr9:73486034-73594114	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv430072	chr9:73509677-73640530	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73571000-73579800	Weak transcription	Osteobl	bone
2	chr9:73574600-73579600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr9:73575200-73580000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr9:73578000-73579400	Enhancers	Liver	Liver
5	chr9:73578200-73580200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr9:73578800-73580400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr9:73579200-73580400	Enhancers	HSMMtube	muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links