Variant report

Variant	rs2911409
Chromosome Location	chr16:82224071-82224072
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10871424	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10871425	0.94[ASN][1000 genomes]
rs12447195	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1424155	0.83[ASN][1000 genomes]
rs1424156	0.82[ASN][1000 genomes]
rs1559425	0.83[ASN][1000 genomes]
rs1559426	0.83[ASN][1000 genomes]
rs17232243	0.90[ASN][1000 genomes]
rs17232307	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17232342	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1862820	0.82[ASN][1000 genomes]
rs1987155	0.84[ASN][1000 genomes]
rs2911379	0.80[ASN][1000 genomes]
rs2911381	0.81[ASN][1000 genomes]
rs2911382	0.81[ASN][1000 genomes]
rs2911385	0.81[ASN][1000 genomes]
rs2911386	0.81[ASN][1000 genomes]
rs2911388	0.82[ASN][1000 genomes]
rs2911389	0.82[ASN][1000 genomes]
rs2911392	0.82[ASN][1000 genomes]
rs2911393	0.82[ASN][1000 genomes]
rs2911394	0.83[ASN][1000 genomes]
rs2911395	0.83[ASN][1000 genomes]
rs2911397	0.84[ASN][1000 genomes]
rs2911398	0.84[ASN][1000 genomes]
rs2911399	0.84[ASN][1000 genomes]
rs2911400	0.84[ASN][1000 genomes]
rs2911401	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2911403	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2911404	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2967365	0.80[ASN][1000 genomes]
rs2967366	0.81[ASN][1000 genomes]
rs2967367	0.81[ASN][1000 genomes]
rs2967369	0.81[ASN][1000 genomes]
rs2967370	0.81[ASN][1000 genomes]
rs2967371	0.81[ASN][1000 genomes]
rs2967376	0.84[ASN][1000 genomes]
rs2967378	0.84[ASN][1000 genomes]
rs2967379	0.84[ASN][1000 genomes]
rs2967380	0.84[ASN][1000 genomes]
rs2967381	0.82[ASN][1000 genomes]
rs2967382	0.84[ASN][1000 genomes]
rs3829547	0.80[ASN][1000 genomes]
rs3829549	0.81[ASN][1000 genomes]
rs3829550	0.81[ASN][1000 genomes]
rs3898333	0.84[ASN][1000 genomes]
rs4999637	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60960296	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7205347	0.80[ASN][1000 genomes]
rs918759	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs918760	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs918761	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs918763	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs959837	0.84[ASN][1000 genomes]
rs959838	0.84[ASN][1000 genomes]
rs978970	0.83[ASN][1000 genomes]
rs978971	0.83[ASN][1000 genomes]
rs9938830	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532598	chr16:82034475-82738733	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
2	nsv532599	chr16:82074439-82926863	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
3	nsv573367	chr16:82140561-83040846	Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
4	nsv518129	chr16:82188173-82228076	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv833302	chr16:82188351-82363863	Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	esv1844598	chr16:82195234-82429790	Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
7	esv1847414	chr16:82195234-82429790	Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
8	nsv532600	chr16:82197554-82314289	Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
9	nsv907015	chr16:82203758-82284056	Active TSS Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
10	nsv1065896	chr16:82213517-82731994	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2911409	MPHOSPH6	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:82222600-82226200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr16:82223000-82224200	Enhancers	Monocytes-CD14+_RO01746	blood
3	chr16:82223000-82231400	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr16:82223200-82225800	Weak transcription	NHEK	skin
5	chr16:82223400-82226200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr16:82224000-82224200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr16:82224000-82225800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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