Variant report
Variant | rs2911399 |
---|---|
Chromosome Location | chr16:82213477-82213478 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs1056675 | 0.81[ASN][1000 genomes] |
rs1064208 | 0.81[ASN][1000 genomes] |
rs10871424 | 0.83[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs10871425 | 0.87[ASN][1000 genomes] |
rs12446210 | 0.86[ASN][1000 genomes] |
rs12447195 | 0.83[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs12598637 | 0.86[ASN][1000 genomes] |
rs1424155 | 0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[ASN][1000 genomes] |
rs1424156 | 1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs1559425 | 0.98[ASN][1000 genomes] |
rs1559426 | 0.83[AMR][1000 genomes];0.98[ASN][1000 genomes] |
rs17232243 | 0.93[ASN][1000 genomes] |
rs17232307 | 0.83[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs17232342 | 0.83[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs1834053 | 0.92[ASN][1000 genomes] |
rs1834054 | 0.91[ASN][1000 genomes] |
rs1862820 | 0.81[AMR][1000 genomes];0.98[ASN][1000 genomes] |
rs1987155 | 1.00[ASN][1000 genomes] |
rs2303266 | 0.87[ASN][1000 genomes] |
rs2911378 | 0.83[AMR][1000 genomes];0.96[ASN][1000 genomes] |
rs2911379 | 0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[ASN][1000 genomes] |
rs2911380 | 0.95[ASN][1000 genomes] |
rs2911381 | 0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[ASN][1000 genomes] |
rs2911382 | 0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[ASN][1000 genomes] |
rs2911385 | 0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[ASN][1000 genomes] |
rs2911386 | 0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[ASN][1000 genomes] |
rs2911388 | 0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[ASN][1000 genomes] |
rs2911389 | 0.98[ASN][1000 genomes] |
rs2911391 | 0.94[ASN][1000 genomes] |
rs2911392 | 0.81[AMR][1000 genomes];0.98[ASN][1000 genomes] |
rs2911393 | 0.98[ASN][1000 genomes] |
rs2911394 | 0.82[AMR][1000 genomes];0.98[ASN][1000 genomes] |
rs2911395 | 0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[ASN][1000 genomes] |
rs2911396 | 0.94[ASN][1000 genomes] |
rs2911397 | 0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs2911398 | 1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs2911400 | 0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs2911401 | 0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs2911403 | 0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs2911404 | 0.84[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs2911409 | 0.84[ASN][1000 genomes] |
rs2967365 | 0.96[ASN][1000 genomes] |
rs2967366 | 0.82[AMR][1000 genomes];0.97[ASN][1000 genomes] |
rs2967367 | 0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[ASN][1000 genomes] |
rs2967369 | 0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[ASN][1000 genomes] |
rs2967370 | 0.97[ASN][1000 genomes] |
rs2967371 | 0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[ASN][1000 genomes] |
rs2967376 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs2967378 | 1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs2967379 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs2967380 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs2967381 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs2967382 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs3829545 | 0.88[ASN][1000 genomes] |
rs3829546 | 0.95[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[ASN][1000 genomes] |
rs3829547 | 0.96[ASN][1000 genomes] |
rs3829549 | 0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[ASN][1000 genomes] |
rs3829550 | 0.97[ASN][1000 genomes] |
rs3898333 | 0.99[ASN][1000 genomes] |
rs4889476 | 0.86[ASN][1000 genomes] |
rs4999637 | 0.83[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs56116174 | 0.96[ASN][1000 genomes] |
rs60960296 | 0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7205347 | 0.96[ASN][1000 genomes] |
rs7206501 | 0.81[ASN][1000 genomes] |
rs918759 | 0.91[ASN][1000 genomes] |
rs918760 | 0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs918761 | 0.87[ASN][1000 genomes] |
rs918763 | 0.88[ASN][1000 genomes] |
rs959837 | 0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs959838 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs978970 | 0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[ASN][1000 genomes] |
rs978971 | 0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[ASN][1000 genomes] |
rs9938830 | 0.88[EUR][1000 genomes];0.87[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv532598 | chr16:82034475-82738733 | Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 28 gene(s) | inside rSNPs | diseases |
2 | nsv532599 | chr16:82074439-82926863 | Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 27 gene(s) | inside rSNPs | diseases |
3 | nsv573367 | chr16:82140561-83040846 | Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 27 gene(s) | inside rSNPs | diseases |
4 | nsv457579 | chr16:82150293-82216622 | Strong transcription Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
5 | nsv573368 | chr16:82150293-82216622 | Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
6 | nsv525467 | chr16:82154619-82223485 | Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
7 | nsv1061064 | chr16:82165314-82213799 | Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
8 | nsv1056381 | chr16:82165314-82215388 | Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
9 | nsv1062687 | chr16:82165516-82213799 | Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
10 | nsv518129 | chr16:82188173-82228076 | Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
11 | nsv833302 | chr16:82188351-82363863 | Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
12 | esv1844598 | chr16:82195234-82429790 | Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
13 | esv1847414 | chr16:82195234-82429790 | Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
14 | nsv532600 | chr16:82197554-82314289 | Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
15 | nsv907015 | chr16:82203758-82284056 | Active TSS Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
16 | nsv817745 | chr16:82213239-82216622 | Enhancers Weak transcription | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr16:82209800-82214200 | Weak transcription | Primary monocytes fromperipheralblood | blood |