The 2.0 version of rSNPBase

Variant report

Variant rs2911577
Chromosome Location chr1:85163592-85163593
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:62 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:85157000-85164000 Weak transcription Fetal Lung lung
2 chr1:85157000-85164600 Weak transcription Sigmoid Colon Sigmoid Colon
3 chr1:85157200-85163800 Weak transcription Brain Hippocampus Middle brain
4 chr1:85157400-85164000 Weak transcription Fetal Brain Female brain
5 chr1:85157400-85167200 Weak transcription Psoas Muscle Psoas
6 chr1:85158200-85164000 Weak transcription Brain Substantia Nigra brain
7 chr1:85159000-85163800 Weak transcription Fetal Kidney kidney
8 chr1:85159000-85164000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
9 chr1:85159200-85163800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
10 chr1:85159200-85164800 Weak transcription Primary hematopoietic stem cells short term culture blood
11 chr1:85159600-85164000 Weak transcription Fetal Thymus thymus
12 chr1:85159600-85164200 Weak transcription Primary T cells from cord blood blood
13 chr1:85162600-85164200 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
14 chr1:85162800-85163800 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
15 chr1:85162800-85164000 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
16 chr1:85162800-85165200 Enhancers Fetal Stomach stomach
17 chr1:85162800-85165200 Enhancers Stomach Smooth Muscle stomach
18 chr1:85162800-85166200 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
19 chr1:85162800-85166200 Enhancers Fetal Brain Male brain
20 chr1:85162800-85166200 Enhancers Fetal Intestine Large intestine
21 chr1:85162800-85166400 Enhancers Fetal Intestine Small intestine
22 chr1:85163000-85163600 Enhancers Esophagus oesophagus
23 chr1:85163000-85164000 Enhancers Muscle Satellite Cultured Cells --
24 chr1:85163000-85164200 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
25 chr1:85163000-85164200 Enhancers NHLF lung
26 chr1:85163000-85164800 Enhancers iPS-20b Cell Line embryonic stem cell
27 chr1:85163000-85164800 Enhancers HSMM muscle
28 chr1:85163000-85165200 Enhancers iPS-18 Cell Line embryonic stem cell
29 chr1:85163000-85165200 Enhancers HMEC breast
30 chr1:85163000-85166200 Enhancers K562 blood
31 chr1:85163000-85166400 Enhancers Colon Smooth Muscle Colon
32 chr1:85163000-85168400 Enhancers Rectal Smooth Muscle rectum
33 chr1:85163200-85163600 Enhancers iPS DF 6.9 Cell Line embryonic stem cell
34 chr1:85163200-85164000 Weak transcription iPS-15b Cell Line embryonic stem cell
35 chr1:85163200-85164000 Enhancers Osteobl bone
36 chr1:85163200-85164200 Weak transcription Aorta Aorta
37 chr1:85163200-85164200 Enhancers NH-A brain
38 chr1:85163200-85164400 Enhancers ES-UCSF4 Cell Line embryonic stem cell
39 chr1:85163200-85164800 Enhancers HUES6 Cell Line embryonic stem cell
40 chr1:85163200-85164800 Enhancers HSMMtube muscle
41 chr1:85163200-85165000 Enhancers H1 Cell Line embryonic stem cell
42 chr1:85163200-85165000 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
43 chr1:85163200-85165200 Enhancers HUES48 Cell Line embryonic stem cell
44 chr1:85163200-85165200 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
45 chr1:85163200-85165200 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
46 chr1:85163200-85165200 Enhancers Hela-S3 cervix
47 chr1:85163200-85165200 Enhancers NHEK skin
48 chr1:85163200-85165400 Enhancers ES-I3 Cell Line embryonic stem cell
49 chr1:85163200-85166200 Enhancers Duodenum Mucosa Duodenum
50 chr1:85163400-85164000 Enhancers Duodenum Smooth Muscle Duodenum

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Last update: Aug 31, 2015