Variant report

Variant	rs2911726
Chromosome Location	chr11:57439262-57439263
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:57436045..57439920-chr11:57463580..57467800,3	K562	blood:
2	chr11:57437681..57440408-chr11:57478752..57481185,2	K562	blood:
3	chr11:57438475..57441494-chr11:57446388..57449628,4	K562	blood:

Variant related genes	Relation type
ENSG00000156603	Chromatin interaction
ENSG00000213593	Chromatin interaction
ENSG00000254462	Chromatin interaction
ENSG00000156599	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11229097	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11570222	1.00[ASW][hapmap];1.00[LWK][hapmap];0.84[MKK][hapmap];1.00[YRI][hapmap]
rs12284270	1.00[YRI][hapmap]
rs2926651	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2926652	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2926657	1.00[ASW][hapmap];1.00[LWK][hapmap];0.95[MKK][hapmap];0.95[YRI][hapmap];0.81[AFR][1000 genomes]
rs2956979	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2969934	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2969940	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2969946	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs686459	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044030	chr11:57073395-58035564	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
2	nsv541047	chr11:57073395-58035564	Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
3	nsv530621	chr11:57139699-57703639	Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	109 gene(s)	inside rSNPs	diseases
4	nsv832163	chr11:57299354-57481050	Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
5	nsv1040913	chr11:57315006-57696122	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
6	nsv832164	chr11:57407617-57578825	Enhancers Strong transcription Genic enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
7	nsv508633	chr11:57419585-57560045	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:57436400-57439800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:57436400-57439800	Weak transcription	Gastric	stomach
3	chr11:57436400-57439800	Weak transcription	Ovary	ovary
4	chr11:57436400-57439800	Weak transcription	Spleen	Spleen
5	chr11:57436400-57440200	Weak transcription	Pancreas	Pancrea
6	chr11:57436400-57440400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:57436600-57439800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr11:57436600-57440400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr11:57436600-57479000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr11:57436800-57439800	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr11:57436800-57441800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr11:57437000-57439400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr11:57437000-57439400	Enhancers	Primary T killer memory cells from peripheral blood	blood
14	chr11:57437000-57439400	Weak transcription	Brain Substantia Nigra	brain
15	chr11:57437000-57439400	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr11:57437000-57439600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
17	chr11:57437000-57439800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
18	chr11:57437000-57439800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
19	chr11:57437000-57440200	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr11:57437000-57440400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr11:57437200-57439400	Weak transcription	Placenta	Placenta
22	chr11:57437200-57439600	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr11:57437200-57439600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr11:57437200-57439600	Weak transcription	Brain Hippocampus Middle	brain
25	chr11:57437200-57439600	Weak transcription	Colonic Mucosa	Colon
26	chr11:57437200-57439800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr11:57437200-57439800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr11:57437200-57439800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr11:57437200-57439800	Weak transcription	Fetal Stomach	stomach
30	chr11:57437200-57439800	Weak transcription	Stomach Smooth Muscle	stomach
31	chr11:57437200-57440200	Weak transcription	Esophagus	oesophagus
32	chr11:57437400-57439400	Enhancers	Primary T helper cells PMA-I stimulated	--
33	chr11:57437400-57439400	Weak transcription	Fetal Brain Male	brain
34	chr11:57437400-57439400	Weak transcription	A549	lung
35	chr11:57437400-57439400	Weak transcription	NHDF-Ad	bronchial
36	chr11:57437400-57439600	Weak transcription	Brain Angular Gyrus	brain
37	chr11:57437400-57439800	Weak transcription	Fetal Muscle Leg	muscle
38	chr11:57437400-57439800	Weak transcription	Right Ventricle	heart
39	chr11:57437400-57440000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr11:57437400-57442200	Weak transcription	Stomach Mucosa	stomach
41	chr11:57437400-57449800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr11:57437400-57458000	Weak transcription	Fetal Heart	heart
43	chr11:57437600-57439400	Weak transcription	HSMM	muscle
44	chr11:57437600-57439400	Weak transcription	Osteobl	bone
45	chr11:57437600-57439600	Weak transcription	Fetal Lung	lung
46	chr11:57437600-57439800	Weak transcription	Brain Germinal Matrix	brain
47	chr11:57437600-57441000	Genic enhancers	K562	blood
48	chr11:57437800-57439400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr11:57437800-57439400	Weak transcription	HUVEC	blood vessel
50	chr11:57437800-57439600	Weak transcription	Muscle Satellite Cultured Cells	--

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