Variant report

Variant	rs686459
Chromosome Location	chr11:57637098-57637099
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10896641	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11570214	0.90[AFR][1000 genomes]
rs11570222	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12284270	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1704778	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2084298	1.00[CEU][hapmap]
rs2441954	1.00[CEU][hapmap]
rs2441978	1.00[CEU][hapmap]
rs2513723	1.00[CEU][hapmap]
rs2514203	1.00[CEU][hapmap]
rs2911726	1.00[YRI][hapmap]
rs2926652	1.00[YRI][hapmap]
rs2926657	0.95[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2969940	1.00[YRI][hapmap]
rs2969946	1.00[YRI][hapmap]
rs613152	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs620450	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs637770	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs896298	1.00[CEU][hapmap]
rs896299	1.00[CEU][hapmap]
rs975831	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044030	chr11:57073395-58035564	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
2	nsv541047	chr11:57073395-58035564	Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
3	nsv530621	chr11:57139699-57703639	Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	109 gene(s)	inside rSNPs	diseases
4	nsv1040913	chr11:57315006-57696122	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
5	nsv1054205	chr11:57544264-58358509	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
6	nsv897589	chr11:57623815-58052357	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
7	nsv972031	chr11:57634590-57637890	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:57634400-57640400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:57634800-57637600	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr11:57635000-57637400	Enhancers	H1 Cell Line	embryonic stem cell
4	chr11:57635000-57637800	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr11:57635200-57637600	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr11:57635200-57637800	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr11:57635400-57637400	Enhancers	H9 Cell Line	embryonic stem cell
8	chr11:57635400-57637400	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr11:57635800-57640200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr11:57636200-57637200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr11:57636200-57637200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr11:57636400-57638000	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr11:57636600-57637600	Enhancers	Adipose Nuclei	Adipose
14	chr11:57636600-57637800	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr11:57636600-57637800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr11:57636800-57637800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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