Variant report

Variant	rs896298
Chromosome Location	chr11:57826129-57826130
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11229181	1.00[EUR][1000 genomes]
rs11229182	1.00[EUR][1000 genomes]
rs12273150	1.00[EUR][1000 genomes]
rs12295135	1.00[EUR][1000 genomes]
rs1447176	1.00[EUR][1000 genomes]
rs17152248	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17152254	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17152435	1.00[EUR][1000 genomes]
rs17152440	1.00[EUR][1000 genomes]
rs17152444	1.00[EUR][1000 genomes]
rs17152453	1.00[EUR][1000 genomes]
rs17152457	1.00[EUR][1000 genomes]
rs17152464	1.00[EUR][1000 genomes]
rs17152465	1.00[EUR][1000 genomes]
rs17152479	1.00[EUR][1000 genomes]
rs2084298	1.00[CEU][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2122804	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2441954	1.00[CEU][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2441978	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2443451	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2513723	1.00[CEU][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2514185	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2514198	1.00[EUR][1000 genomes]
rs2514203	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs686459	1.00[CEU][hapmap]
rs896299	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs975831	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044030	chr11:57073395-58035564	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
2	nsv541047	chr11:57073395-58035564	Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
3	nsv1054205	chr11:57544264-58358509	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
4	nsv897589	chr11:57623815-58052357	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
5	nsv832165	chr11:57806024-58009076	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:57823600-57828400	Enhancers	HepG2	liver
2	chr11:57824600-57826400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr11:57824600-57830000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr11:57824600-57830600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr11:57824800-57826800	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr11:57824800-57830000	Enhancers	Placenta Amnion	Placenta Amnion
7	chr11:57824800-57830200	Enhancers	NHLF	lung
8	chr11:57825000-57826400	Enhancers	Pancreas	Pancrea
9	chr11:57825000-57826800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr11:57825000-57826800	Enhancers	Placenta	Placenta
11	chr11:57825000-57830200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr11:57825000-57830600	Enhancers	HMEC	breast
13	chr11:57825200-57826800	Enhancers	H1 Cell Line	embryonic stem cell
14	chr11:57825200-57830600	Enhancers	NHEK	skin
15	chr11:57825400-57826800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr11:57825400-57828800	Enhancers	Fetal Heart	heart
17	chr11:57825400-57830000	Enhancers	Muscle Satellite Cultured Cells	--
18	chr11:57825600-57826200	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr11:57825600-57826200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr11:57825600-57826200	Enhancers	Aorta	Aorta
21	chr11:57825600-57826400	Enhancers	Gastric	stomach
22	chr11:57825600-57826400	Enhancers	Lung	lung
23	chr11:57825600-57826400	Enhancers	Right Atrium	heart
24	chr11:57825600-57826400	Enhancers	Right Ventricle	heart
25	chr11:57825600-57826600	Enhancers	Stomach Smooth Muscle	stomach
26	chr11:57825600-57826800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr11:57825600-57826800	Enhancers	Left Ventricle	heart
28	chr11:57825600-57826800	Enhancers	Skeletal Muscle Male	skeletal muscle
29	chr11:57825600-57826800	Enhancers	NH-A	brain
30	chr11:57825600-57827000	Enhancers	Fetal Muscle Trunk	muscle
31	chr11:57825600-57827000	Enhancers	HUVEC	blood vessel
32	chr11:57825600-57827600	Enhancers	Fetal Muscle Leg	muscle
33	chr11:57825800-57826200	Flanking Active TSS	HSMM	muscle
34	chr11:57825800-57826400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr11:57825800-57826400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr11:57825800-57826400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr11:57825800-57826400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr11:57825800-57826600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr11:57825800-57826600	Enhancers	Adipose Nuclei	Adipose
40	chr11:57825800-57826600	Enhancers	Ovary	ovary
41	chr11:57825800-57826600	Enhancers	Osteobl	bone
42	chr11:57825800-57826800	Enhancers	Colon Smooth Muscle	Colon
43	chr11:57825800-57826800	Enhancers	Fetal Lung	lung
44	chr11:57825800-57827000	Enhancers	HUES6 Cell Line	embryonic stem cell
45	chr11:57825800-57827600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr11:57825800-57828600	Enhancers	HUES48 Cell Line	embryonic stem cell
47	chr11:57825800-57829600	Enhancers	Fetal Intestine Large	intestine
48	chr11:57825800-57830000	Enhancers	HUES64 Cell Line	embryonic stem cell
49	chr11:57826000-57826400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr11:57826000-57826400	Flanking Active TSS	Rectal Smooth Muscle	rectum

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