Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10896668	0.87[AFR][1000 genomes]
rs11229181	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11229182	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12273150	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1447176	1.00[EUR][1000 genomes]
rs17152248	1.00[EUR][1000 genomes]
rs17152254	1.00[EUR][1000 genomes]
rs2084298	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs2122804	1.00[EUR][1000 genomes]
rs2441954	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs2441978	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2443451	1.00[EUR][1000 genomes]
rs2513723	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs2514185	1.00[EUR][1000 genomes]
rs2514198	1.00[EUR][1000 genomes]
rs2514203	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs686459	1.00[CEU][hapmap]
rs896298	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs896299	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs975831	1.00[CEU][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044030	chr11:57073395-58035564	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
2	nsv541047	chr11:57073395-58035564	Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
3	nsv1054205	chr11:57544264-58358509	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
4	nsv897589	chr11:57623815-58052357	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:57707400-57710600	Enhancers	NHEK	skin
2	chr11:57707600-57709600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:57707600-57710600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr11:57707600-57710600	Enhancers	HepG2	liver
5	chr11:57707800-57709600	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr11:57708000-57709400	Weak transcription	Esophagus	oesophagus
7	chr11:57708600-57709400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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