Variant report

No.	Distal block	Cell Line	Cell type
1	chr3:88011920..88014768-chr5:138939490..138942300,2	K562	blood:
2	chr3:88006275..88008008-chr3:88012580..88014514,2	K562	blood:
3	chr3:88006508..88009782-chr3:88012580..88015911,3	K562	blood:

Variant related genes	Relation type
ENSG00000131508	Chromatin interaction

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1503431	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1503432	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1847310	1.00[EUR][1000 genomes]
rs1847312	1.00[EUR][1000 genomes]
rs1897237	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1906913	1.00[EUR][1000 genomes]
rs1906914	1.00[EUR][1000 genomes]
rs2116146	1.00[EUR][1000 genomes]
rs2116147	1.00[EUR][1000 genomes]
rs2116148	1.00[EUR][1000 genomes]
rs2163421	1.00[EUR][1000 genomes]
rs2217495	1.00[EUR][1000 genomes]
rs2217496	1.00[EUR][1000 genomes]
rs2915283	1.00[EUR][1000 genomes]
rs2915287	1.00[EUR][1000 genomes]
rs2915289	1.00[EUR][1000 genomes]
rs2919268	1.00[EUR][1000 genomes]
rs2919273	1.00[EUR][1000 genomes]
rs2932278	1.00[EUR][1000 genomes]
rs2938269	1.00[EUR][1000 genomes]
rs2938278	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs891597	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834758	chr3:87867363-88014975	Strong transcription Enhancers ZNF genes & repeats Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv877146	chr3:87983962-88159835	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:88012400-88013600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr3:88012400-88023800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr3:88012600-88014200	Strong transcription	Primary hematopoietic stem cells	blood
4	chr3:88013000-88014000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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