Variant report

Variant	rs1503431
Chromosome Location	chr3:87942861-87942862
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs1021845	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1158019	1.00[ASN][1000 genomes]
rs1431154	1.00[CHB][hapmap]
rs1431155	1.00[CHB][hapmap]
rs1469570	1.00[CHB][hapmap]
rs1489775	1.00[ASN][1000 genomes]
rs1503432	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1503435	1.00[ASN][1000 genomes]
rs1602153	1.00[ASN][1000 genomes]
rs1812620	1.00[ASN][1000 genomes]
rs1844432	1.00[ASN][1000 genomes]
rs1844433	1.00[ASN][1000 genomes]
rs1847310	1.00[EUR][1000 genomes]
rs1847312	1.00[EUR][1000 genomes]
rs1897237	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1906913	1.00[EUR][1000 genomes]
rs1906914	1.00[EUR][1000 genomes]
rs1910400	1.00[ASN][1000 genomes]
rs2116146	1.00[EUR][1000 genomes]
rs2116147	1.00[EUR][1000 genomes]
rs2116148	1.00[EUR][1000 genomes]
rs2130347	1.00[ASN][1000 genomes]
rs2130349	1.00[ASN][1000 genomes]
rs2163421	1.00[EUR][1000 genomes]
rs2217495	1.00[EUR][1000 genomes]
rs2217496	1.00[EUR][1000 genomes]
rs2344184	1.00[CHB][hapmap]
rs28690491	1.00[ASN][1000 genomes]
rs2915279	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2915283	1.00[EUR][1000 genomes]
rs2915287	1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs2915289	1.00[EUR][1000 genomes]
rs2919237	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2919239	1.00[ASN][1000 genomes]
rs2919245	1.00[ASN][1000 genomes]
rs2919246	1.00[ASN][1000 genomes]
rs2919247	1.00[ASN][1000 genomes]
rs2919250	1.00[ASN][1000 genomes]
rs2919256	1.00[ASN][1000 genomes]
rs2919257	1.00[ASN][1000 genomes]
rs2919259	1.00[ASN][1000 genomes]
rs2919268	1.00[EUR][1000 genomes]
rs2919273	1.00[EUR][1000 genomes]
rs2932266	1.00[ASN][1000 genomes]
rs2932267	1.00[ASN][1000 genomes]
rs2932269	1.00[ASN][1000 genomes]
rs2932271	1.00[ASN][1000 genomes]
rs2932278	1.00[EUR][1000 genomes]
rs2932287	1.00[ASN][1000 genomes]
rs2932297	1.00[ASN][1000 genomes]
rs2932308	1.00[ASN][1000 genomes]
rs2938269	1.00[EUR][1000 genomes]
rs2938278	1.00[EUR][1000 genomes]
rs2938281	1.00[ASN][1000 genomes]
rs4431134	1.00[CHB][hapmap]
rs59395828	1.00[ASN][1000 genomes]
rs6774364	1.00[ASN][1000 genomes]
rs6777373	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6787171	1.00[ASN][1000 genomes]
rs6790616	1.00[ASN][1000 genomes]
rs6796732	1.00[ASN][1000 genomes]
rs6807498	1.00[ASN][1000 genomes]
rs72911631	1.00[ASN][1000 genomes]
rs7641305	1.00[ASN][1000 genomes]
rs7650749	1.00[CHB][hapmap]
rs891597	1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs9812903	1.00[CHB][hapmap]
rs9816019	1.00[ASN][1000 genomes]
rs9854145	1.00[ASN][1000 genomes]
rs9854250	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009981	chr3:87821573-88003956	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv536634	chr3:87821573-88003956	Bivalent/Poised TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv460757	chr3:87863280-87949733	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv590919	chr3:87863280-87949733	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv834758	chr3:87867363-88014975	Strong transcription Enhancers ZNF genes & repeats Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv2760794	chr3:87932310-87953742	Weak transcription ZNF genes & repeats Strong transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv1001572	chr3:87942288-87983962	Strong transcription Weak transcription Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:87938800-87946800	Weak transcription	Primary hematopoietic stem cells	blood
2	chr3:87941400-87944400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr3:87942600-87947400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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