Variant report

Variant	rs6790616
Chromosome Location	chr3:87853122-87853123
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1021845	1.00[ASN][1000 genomes]
rs1158019	1.00[ASN][1000 genomes]
rs1489775	1.00[ASN][1000 genomes]
rs1503431	1.00[ASN][1000 genomes]
rs1503435	1.00[ASN][1000 genomes]
rs1602153	1.00[ASN][1000 genomes]
rs1812620	1.00[ASN][1000 genomes]
rs1844432	1.00[ASN][1000 genomes]
rs1844433	1.00[ASN][1000 genomes]
rs1897237	1.00[ASN][1000 genomes]
rs1910400	1.00[ASN][1000 genomes]
rs2130347	1.00[ASN][1000 genomes]
rs2130349	1.00[ASN][1000 genomes]
rs28690491	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2919237	1.00[ASN][1000 genomes]
rs2919239	1.00[ASN][1000 genomes]
rs2919245	1.00[ASN][1000 genomes]
rs2919246	1.00[ASN][1000 genomes]
rs2919247	1.00[ASN][1000 genomes]
rs2919250	1.00[ASN][1000 genomes]
rs2919256	1.00[ASN][1000 genomes]
rs2919257	1.00[ASN][1000 genomes]
rs2919259	1.00[ASN][1000 genomes]
rs2932266	1.00[ASN][1000 genomes]
rs2932267	1.00[ASN][1000 genomes]
rs2932269	1.00[ASN][1000 genomes]
rs2932271	1.00[ASN][1000 genomes]
rs2932287	1.00[ASN][1000 genomes]
rs2932297	1.00[ASN][1000 genomes]
rs2932308	1.00[ASN][1000 genomes]
rs2938281	1.00[ASN][1000 genomes]
rs59395828	1.00[ASN][1000 genomes]
rs6774364	1.00[ASN][1000 genomes]
rs6777373	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6787171	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6796732	1.00[ASN][1000 genomes]
rs6807498	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72911631	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7641305	1.00[ASN][1000 genomes]
rs9816019	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9854145	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv590918	chr3:87323334-87910931	Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv877142	chr3:87630433-87854277	Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv877143	chr3:87630433-87860130	Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Weak transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv834756	chr3:87763793-87938179	Bivalent/Poised TSS Strong transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1009981	chr3:87821573-88003956	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv536634	chr3:87821573-88003956	Bivalent/Poised TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:87845600-87855800	Weak transcription	A549	lung
2	chr3:87850800-87853800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr3:87850800-87859200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr3:87851000-87855200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr3:87851000-87860800	Weak transcription	Primary hematopoietic stem cells	blood
6	chr3:87851400-87854800	Enhancers	K562	blood
7	chr3:87852800-87854600	Weak transcription	Pancreatic Islets	Pancreatic Islet

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