Variant report

Variant	rs1431155
Chromosome Location	chr3:88081074-88081075
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:88079170..88082380-chr3:88083202..88085793,3	MCF-7	breast:
2	chr3:88080562..88082885-chr3:88098755..88100923,2	MCF-7	breast:
3	chr3:88079258..88082127-chr3:88106343..88109218,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000229729	Chromatin interaction
ENSG00000163320	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs12632860	1.00[ASN][1000 genomes]
rs1431154	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1431156	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1469570	1.00[CHB][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1594453	1.00[ASN][1000 genomes]
rs1594455	1.00[ASN][1000 genomes]
rs1604700	1.00[ASN][1000 genomes]
rs1835544	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1897238	1.00[ASN][1000 genomes]
rs2033390	1.00[ASN][1000 genomes]
rs2344183	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2344184	1.00[CHB][hapmap];0.96[YRI][hapmap];0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2880793	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2915287	1.00[CHB][hapmap]
rs4431134	1.00[CHB][hapmap];0.88[YRI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4515075	1.00[ASN][1000 genomes]
rs4616669	1.00[ASN][1000 genomes]
rs4858927	1.00[ASN][1000 genomes]
rs4858970	1.00[ASN][1000 genomes]
rs6301	0.83[EUR][1000 genomes]
rs6767497	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7650749	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs891597	1.00[CHB][hapmap]
rs930154	1.00[ASN][1000 genomes]
rs930155	0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9310062	1.00[ASN][1000 genomes]
rs9310063	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9310064	1.00[ASN][1000 genomes]
rs9812903	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9833231	1.00[ASN][1000 genomes]
rs9850550	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9854250	1.00[CHB][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9867614	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877146	chr3:87983962-88159835	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases
2	nsv536635	chr3:88049304-88088520	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:88079200-88081400	Active TSS	GM12878-XiMat	blood
2	chr3:88079400-88081800	Active TSS	NHDF-Ad	bronchial
3	chr3:88080000-88081200	Active TSS	Pancreatic Islets	Pancreatic Islet
4	chr3:88080000-88084400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr3:88080400-88081200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr3:88080400-88081600	Flanking Active TSS	Primary hematopoietic stem cells	blood
7	chr3:88080400-88081600	Active TSS	Brain Angular Gyrus	brain
8	chr3:88080400-88081600	Active TSS	Brain Anterior Caudate	brain
9	chr3:88080400-88081600	Active TSS	K562	blood
10	chr3:88080400-88081800	Active TSS	Brain Hippocampus Middle	brain
11	chr3:88080400-88081800	Flanking Active TSS	Dnd41	blood
12	chr3:88080400-88081800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
13	chr3:88080400-88082200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
14	chr3:88080600-88081200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr3:88080600-88081200	Flanking Active TSS	Rectal Smooth Muscle	rectum
16	chr3:88080600-88081400	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr3:88080600-88081400	Active TSS	Muscle Satellite Cultured Cells	--
18	chr3:88080600-88081400	Active TSS	NHEK	skin
19	chr3:88080600-88081600	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
20	chr3:88080600-88081600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
21	chr3:88080600-88081600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
22	chr3:88080600-88081600	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
23	chr3:88080600-88081600	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
24	chr3:88080600-88081600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr3:88080600-88081600	Active TSS	Aorta	Aorta
26	chr3:88080600-88081600	Active TSS	Brain Cingulate Gyrus	brain
27	chr3:88080600-88081600	Active TSS	Brain Substantia Nigra	brain
28	chr3:88080600-88081600	Active TSS	Rectal Mucosa Donor 31	rectum
29	chr3:88080600-88081600	Active TSS	Thymus	Thymus
30	chr3:88080600-88081600	Flanking Active TSS	NH-A	brain
31	chr3:88080600-88081800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr3:88080600-88081800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr3:88080600-88081800	Flanking Active TSS	Liver	Liver
34	chr3:88080600-88081800	Active TSS	Right Atrium	heart
35	chr3:88080600-88081800	Active TSS	Skeletal Muscle Female	skeletal muscle
36	chr3:88080600-88081800	Active TSS	Stomach Smooth Muscle	stomach
37	chr3:88080600-88081800	Flanking Active TSS	HUVEC	blood vessel
38	chr3:88080800-88081200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr3:88080800-88081200	Active TSS	Primary T helper naive cells fromperipheralblood	blood
40	chr3:88080800-88081200	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
41	chr3:88080800-88081200	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
42	chr3:88080800-88081200	Flanking Active TSS	Brain Germinal Matrix	brain
43	chr3:88080800-88081200	Active TSS	Esophagus	oesophagus
44	chr3:88080800-88081200	Flanking Active TSS	Fetal Kidney	kidney
45	chr3:88080800-88081200	Active TSS	Fetal Lung	lung
46	chr3:88080800-88081200	Active TSS	Fetal Muscle Trunk	muscle
47	chr3:88080800-88081200	Active TSS	Fetal Stomach	stomach
48	chr3:88080800-88081200	Active TSS	Lung	lung
49	chr3:88080800-88081200	Active TSS	Stomach Mucosa	stomach
50	chr3:88080800-88081200	Active TSS	HepG2	liver

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