Variant report

Variant	rs9812903
Chromosome Location	chr3:88083269-88083270
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:88083004..88084831-chr3:88105005..88107932,2	K562	blood:
2	chr3:88079170..88082380-chr3:88083202..88085793,3	MCF-7	breast:
3	chr3:88074214..88076537-chr3:88081925..88083719,2	MCF-7	breast:
4	chr3:88073344..88075213-chr3:88081187..88083311,2	K562	blood:

Variant related genes	Relation type
ENSG00000163320	Chromatin interaction

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs11128023	1.00[EUR][1000 genomes]
rs12632860	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13079714	0.84[AFR][1000 genomes]
rs1367615	1.00[EUR][1000 genomes]
rs1431154	1.00[CHB][hapmap];0.94[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1431155	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1431156	1.00[ASN][1000 genomes]
rs1469570	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1594453	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1594455	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1604700	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1835544	1.00[ASN][1000 genomes]
rs1897238	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2033390	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2344183	1.00[ASN][1000 genomes]
rs2344184	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2567037	1.00[EUR][1000 genomes]
rs2735557	1.00[EUR][1000 genomes]
rs2880793	1.00[ASN][1000 genomes]
rs2915287	1.00[CHB][hapmap]
rs4241549	1.00[EUR][1000 genomes]
rs4241550	1.00[EUR][1000 genomes]
rs4287925	1.00[EUR][1000 genomes]
rs4404474	1.00[EUR][1000 genomes]
rs4425287	1.00[EUR][1000 genomes]
rs4431134	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4443201	1.00[EUR][1000 genomes]
rs4513473	1.00[EUR][1000 genomes]
rs4515075	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4616669	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4858927	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4858933	1.00[EUR][1000 genomes]
rs4858970	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4858989	1.00[EUR][1000 genomes]
rs6551270	1.00[EUR][1000 genomes]
rs6767497	1.00[ASN][1000 genomes]
rs7615309	1.00[EUR][1000 genomes]
rs7621357	1.00[EUR][1000 genomes]
rs7625641	1.00[EUR][1000 genomes]
rs7633486	1.00[EUR][1000 genomes]
rs7636845	1.00[EUR][1000 genomes]
rs7650749	1.00[CHB][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7650912	1.00[EUR][1000 genomes]
rs7650915	1.00[EUR][1000 genomes]
rs891597	1.00[CHB][hapmap]
rs930154	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs930155	1.00[ASN][1000 genomes]
rs9310062	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9310063	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9310064	1.00[ASN][1000 genomes]
rs9310069	1.00[EUR][1000 genomes]
rs9310073	1.00[EUR][1000 genomes]
rs9833231	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9850550	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9854250	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9860113	1.00[EUR][1000 genomes]
rs9864564	1.00[EUR][1000 genomes]
rs9867614	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877146	chr3:87983962-88159835	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases
2	nsv536635	chr3:88049304-88088520	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:88080000-88084400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr3:88081600-88084000	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr3:88081600-88084000	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr3:88081600-88084000	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr3:88081600-88084200	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr3:88081600-88084600	Enhancers	Primary hematopoietic stem cells	blood
7	chr3:88081600-88086800	Weak transcription	Psoas Muscle	Psoas
8	chr3:88081800-88083400	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr3:88081800-88083600	Weak transcription	HSMM	muscle
10	chr3:88081800-88083800	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr3:88081800-88084000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr3:88081800-88084000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
13	chr3:88081800-88087000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr3:88081800-88087000	Weak transcription	NHEK	skin
15	chr3:88081800-88091200	Weak transcription	Right Atrium	heart
16	chr3:88082200-88083800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr3:88082200-88086600	Weak transcription	NHDF-Ad	bronchial
18	chr3:88082400-88083600	Weak transcription	Primary B cells from cord blood	blood
19	chr3:88082400-88083600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr3:88082400-88087800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr3:88082600-88083800	Weak transcription	Primary B cells from peripheral blood	blood
22	chr3:88083000-88083400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr3:88083000-88083400	Enhancers	Brain Hippocampus Middle	brain
24	chr3:88083000-88083400	Enhancers	Brain Substantia Nigra	brain
25	chr3:88083000-88084000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr3:88083200-88083400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
27	chr3:88083200-88083400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
28	chr3:88083200-88083400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr3:88083200-88083400	Enhancers	Brain Anterior Caudate	brain
30	chr3:88083200-88083400	Enhancers	Stomach Smooth Muscle	stomach
31	chr3:88083200-88083400	Enhancers	Thymus	Thymus
32	chr3:88083200-88083600	Enhancers	Colon Smooth Muscle	Colon
33	chr3:88083200-88083600	Flanking Active TSS	K562	blood
34	chr3:88083200-88084000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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