Variant report

Variant	rs4287925
Chromosome Location	chr3:88167315-88167316
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:88141409..88143744-chr3:88166079..88168749,2	K562	blood:
2	chr3:88156726..88159219-chr3:88165354..88168304,2	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs11128023	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1367615	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1431154	1.00[EUR][1000 genomes]
rs1594453	1.00[EUR][1000 genomes]
rs1594455	1.00[EUR][1000 genomes]
rs1604700	1.00[EUR][1000 genomes]
rs1897238	1.00[EUR][1000 genomes]
rs2033390	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2567037	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2735557	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4241549	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4241550	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4303891	0.86[AFR][1000 genomes]
rs4404474	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4425287	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4443201	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4513473	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4515075	1.00[EUR][1000 genomes]
rs4616669	1.00[EUR][1000 genomes]
rs4858927	1.00[EUR][1000 genomes]
rs4858933	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4858970	1.00[EUR][1000 genomes]
rs4858987	0.81[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs4858988	0.82[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs4858989	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6551270	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7615309	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7621357	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7625641	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7633215	0.92[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs7633486	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7636845	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7650749	1.00[EUR][1000 genomes]
rs7650912	0.99[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7650915	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs930154	1.00[EUR][1000 genomes]
rs9310062	1.00[EUR][1000 genomes]
rs9310063	1.00[EUR][1000 genomes]
rs9310069	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9310073	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9812903	1.00[EUR][1000 genomes]
rs9833231	1.00[EUR][1000 genomes]
rs9850550	1.00[EUR][1000 genomes]
rs9860113	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9864564	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9867614	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916330	chr3:88083580-88884125	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:88128800-88198200	Weak transcription	Esophagus	oesophagus
2	chr3:88129600-88180200	Weak transcription	NHEK	skin
3	chr3:88134000-88176400	Weak transcription	Ovary	ovary
4	chr3:88134800-88188200	Weak transcription	Stomach Smooth Muscle	stomach
5	chr3:88135600-88196800	Weak transcription	Hela-S3	cervix
6	chr3:88137400-88188200	Weak transcription	Fetal Kidney	kidney
7	chr3:88138200-88180800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr3:88140800-88176000	Weak transcription	K562	blood
9	chr3:88141000-88197800	Weak transcription	Thymus	Thymus
10	chr3:88141200-88182200	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr3:88145200-88191000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr3:88145200-88198200	Weak transcription	Aorta	Aorta
13	chr3:88146400-88167400	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr3:88146800-88179600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr3:88148000-88196400	Weak transcription	Fetal Intestine Small	intestine
16	chr3:88150000-88184600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr3:88152000-88197000	Weak transcription	Lung	lung
18	chr3:88154800-88183800	Weak transcription	HUVEC	blood vessel
19	chr3:88155400-88188000	Weak transcription	Psoas Muscle	Psoas
20	chr3:88155400-88188200	Weak transcription	Right Ventricle	heart
21	chr3:88155800-88189200	Weak transcription	Colonic Mucosa	Colon
22	chr3:88156000-88189000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr3:88156400-88167600	Weak transcription	Fetal Muscle Leg	muscle
24	chr3:88158800-88179600	Weak transcription	Pancreas	Pancrea
25	chr3:88159600-88174800	Weak transcription	Colon Smooth Muscle	Colon
26	chr3:88159600-88180800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr3:88159600-88197800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr3:88160400-88179800	Weak transcription	HSMMtube	muscle
29	chr3:88161000-88197800	Weak transcription	Fetal Stomach	stomach
30	chr3:88161800-88184000	Weak transcription	NH-A	brain
31	chr3:88162200-88180600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr3:88162200-88188000	Weak transcription	NHLF	lung
33	chr3:88162400-88168000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr3:88162400-88180200	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr3:88162600-88168200	Strong transcription	Primary B cells from peripheral blood	blood
36	chr3:88162800-88168200	Weak transcription	Brain Anterior Caudate	brain
37	chr3:88162800-88169600	Weak transcription	Rectal Smooth Muscle	rectum
38	chr3:88162800-88180000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr3:88162800-88180400	Weak transcription	Osteobl	bone
40	chr3:88162800-88182000	Weak transcription	A549	lung
41	chr3:88162800-88187800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
42	chr3:88162800-88191600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr3:88162800-88197200	Weak transcription	Brain Cingulate Gyrus	brain
44	chr3:88162800-88198000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr3:88163000-88167400	Strong transcription	Dnd41	blood
46	chr3:88163000-88168000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr3:88163000-88182000	Weak transcription	HUES48 Cell Line	embryonic stem cell
48	chr3:88163400-88167400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
49	chr3:88163400-88168000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr3:88163600-88167600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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