Variant report

Variant	rs1604700
Chromosome Location	chr3:88029676-88029677
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs11128023	1.00[EUR][1000 genomes]
rs12632860	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13079714	0.94[AFR][1000 genomes]
rs1367615	1.00[EUR][1000 genomes]
rs1431154	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1431155	1.00[ASN][1000 genomes]
rs1431156	1.00[ASN][1000 genomes]
rs1469570	1.00[ASN][1000 genomes]
rs1594453	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1594455	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1835544	1.00[ASN][1000 genomes]
rs1897238	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2033390	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2344183	1.00[ASN][1000 genomes]
rs2344184	1.00[ASN][1000 genomes]
rs2567037	1.00[EUR][1000 genomes]
rs2735557	1.00[EUR][1000 genomes]
rs2880793	1.00[ASN][1000 genomes]
rs4241549	1.00[EUR][1000 genomes]
rs4241550	1.00[EUR][1000 genomes]
rs4287925	1.00[EUR][1000 genomes]
rs4404474	1.00[EUR][1000 genomes]
rs4425287	1.00[EUR][1000 genomes]
rs4431134	1.00[ASN][1000 genomes]
rs4443201	1.00[EUR][1000 genomes]
rs4513473	1.00[EUR][1000 genomes]
rs4515075	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4616669	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4858927	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4858933	1.00[EUR][1000 genomes]
rs4858970	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4858989	1.00[EUR][1000 genomes]
rs6551270	1.00[EUR][1000 genomes]
rs6767497	1.00[ASN][1000 genomes]
rs7615309	1.00[EUR][1000 genomes]
rs7621357	1.00[EUR][1000 genomes]
rs7625641	1.00[EUR][1000 genomes]
rs7633486	1.00[EUR][1000 genomes]
rs7636845	1.00[EUR][1000 genomes]
rs7650749	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7650912	1.00[EUR][1000 genomes]
rs7650915	1.00[EUR][1000 genomes]
rs930154	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs930155	1.00[ASN][1000 genomes]
rs9310062	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9310063	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9310064	1.00[ASN][1000 genomes]
rs9310069	1.00[EUR][1000 genomes]
rs9310073	1.00[EUR][1000 genomes]
rs9812903	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9833231	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9850550	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9854250	1.00[ASN][1000 genomes]
rs9860113	1.00[EUR][1000 genomes]
rs9864564	1.00[EUR][1000 genomes]
rs9867614	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877146	chr3:87983962-88159835	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:88020600-88037000	Weak transcription	K562	blood
2	chr3:88026800-88029800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr3:88028600-88030200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
4	chr3:88028800-88030000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr3:88028800-88030000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
6	chr3:88029600-88031800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr3:88029600-88039800	Weak transcription	Primary hematopoietic stem cells	blood

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