The 2.0 version of rSNPBase

Variant report

Variant rs1835544
Chromosome Location chr3:88082224-88082225
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:41 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:88080000-88084400 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
2 chr3:88081400-88082600 Enhancers Fetal Thymus thymus
3 chr3:88081600-88082400 Enhancers Breast Myoepithelial Primary Cells Breast
4 chr3:88081600-88082400 Enhancers Primary B cells from cord blood blood
5 chr3:88081600-88082400 Enhancers Primary T helper naive cells from peripheral blood blood
6 chr3:88081600-88082400 Enhancers Primary T helper 17 cells PMA-I stimulated --
7 chr3:88081600-88082400 Enhancers Foreskin Melanocyte Primary Cells skin01 Skin
8 chr3:88081600-88082600 Enhancers Primary B cells from peripheral blood blood
9 chr3:88081600-88083000 Enhancers Primary T helper memory cells from peripheral blood 2 blood
10 chr3:88081600-88084000 Enhancers Primary monocytes fromperipheralblood blood
11 chr3:88081600-88084000 Enhancers Primary neutrophils fromperipheralblood blood
12 chr3:88081600-88084000 Enhancers Primary T helper cells fromperipheralblood blood
13 chr3:88081600-88084200 Enhancers Primary hematopoietic stem cells short term culture blood
14 chr3:88081600-88084600 Enhancers Primary hematopoietic stem cells blood
15 chr3:88081600-88086800 Weak transcription Psoas Muscle Psoas
16 chr3:88081800-88082400 Enhancers Primary T regulatory cells fromperipheralblood blood
17 chr3:88081800-88082400 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
18 chr3:88081800-88082400 Enhancers Liver Liver
19 chr3:88081800-88082400 Active TSS Brain Anterior Caudate brain
20 chr3:88081800-88082600 Enhancers Thymus Thymus
21 chr3:88081800-88083000 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
22 chr3:88081800-88083000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
23 chr3:88081800-88083000 Weak transcription Brain Hippocampus Middle brain
24 chr3:88081800-88083000 Weak transcription Brain Substantia Nigra brain
25 chr3:88081800-88083200 Weak transcription Primary T cells from cord blood blood
26 chr3:88081800-88083200 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
27 chr3:88081800-88083200 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
28 chr3:88081800-88083200 Weak transcription Colon Smooth Muscle Colon
29 chr3:88081800-88083400 Weak transcription Monocytes-CD14+_RO01746 blood
30 chr3:88081800-88083600 Weak transcription HSMM muscle
31 chr3:88081800-88083800 Enhancers Primary T helper cells PMA-I stimulated --
32 chr3:88081800-88084000 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
33 chr3:88081800-88084000 Enhancers Primary T helper naive cells fromperipheralblood blood
34 chr3:88081800-88087000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
35 chr3:88081800-88087000 Weak transcription NHEK skin
36 chr3:88081800-88091200 Weak transcription Right Atrium heart
37 chr3:88082000-88082400 Weak transcription Stomach Smooth Muscle stomach
38 chr3:88082200-88083200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
39 chr3:88082200-88083200 Enhancers K562 blood
40 chr3:88082200-88083800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
41 chr3:88082200-88086600 Weak transcription NHDF-Ad bronchial

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Last update: Aug 31, 2015