Variant report

Variant	rs919582
Chromosome Location	chr3:88084251-88084252
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1431156	0.90[AFR][1000 genomes]
rs1469570	0.86[AFR][1000 genomes]
rs1835544	0.90[AFR][1000 genomes]
rs2344183	0.94[AFR][1000 genomes]
rs2344184	0.94[AFR][1000 genomes]
rs2880793	0.93[AFR][1000 genomes]
rs4431134	0.85[AFR][1000 genomes]
rs6767497	0.94[AFR][1000 genomes]
rs930155	0.90[AFR][1000 genomes]
rs9310063	0.81[AFR][1000 genomes]
rs9850550	0.81[AFR][1000 genomes]
rs9854250	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877146	chr3:87983962-88159835	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases
2	nsv536635	chr3:88049304-88088520	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
3	nsv916330	chr3:88083580-88884125	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:88080000-88084400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr3:88081600-88084600	Enhancers	Primary hematopoietic stem cells	blood
3	chr3:88081600-88086800	Weak transcription	Psoas Muscle	Psoas
4	chr3:88081800-88087000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr3:88081800-88087000	Weak transcription	NHEK	skin
6	chr3:88081800-88091200	Weak transcription	Right Atrium	heart
7	chr3:88082200-88086600	Weak transcription	NHDF-Ad	bronchial
8	chr3:88082400-88087800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr3:88083400-88084800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr3:88084000-88084400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr3:88084000-88086200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr3:88084000-88086600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr3:88084000-88086600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr3:88084000-88086800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr3:88084200-88084600	Flanking Active TSS	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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