Variant report

Variant	rs1431156
Chromosome Location	chr3:88082149-88082150
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:88079170..88082380-chr3:88083202..88085793,3	MCF-7	breast:
2	chr3:88080562..88082885-chr3:88098755..88100923,2	MCF-7	breast:
3	chr3:88074214..88076537-chr3:88081925..88083719,2	MCF-7	breast:
4	chr3:88073344..88075213-chr3:88081187..88083311,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs12632860	1.00[ASN][1000 genomes]
rs1431154	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1431155	1.00[CHB][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1469570	1.00[CHB][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1594453	1.00[ASN][1000 genomes]
rs1594455	1.00[ASN][1000 genomes]
rs1604700	1.00[ASN][1000 genomes]
rs1835544	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1897238	1.00[ASN][1000 genomes]
rs2033390	1.00[ASN][1000 genomes]
rs2344183	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2344184	1.00[CHB][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2880793	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2915287	1.00[CHB][hapmap]
rs4431134	1.00[CHB][hapmap];0.92[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4515075	1.00[ASN][1000 genomes]
rs4616669	1.00[ASN][1000 genomes]
rs4858927	1.00[ASN][1000 genomes]
rs4858970	1.00[ASN][1000 genomes]
rs6301	0.83[EUR][1000 genomes]
rs6767497	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7650749	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs891597	1.00[CHB][hapmap]
rs919582	0.90[AFR][1000 genomes]
rs930154	1.00[ASN][1000 genomes]
rs930155	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9310062	1.00[ASN][1000 genomes]
rs9310063	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9310064	1.00[ASN][1000 genomes]
rs9812903	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9833231	1.00[ASN][1000 genomes]
rs9850550	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9854250	1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9867614	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877146	chr3:87983962-88159835	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases
2	nsv536635	chr3:88049304-88088520	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:88080000-88084400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr3:88080400-88082200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
3	chr3:88081400-88082600	Enhancers	Fetal Thymus	thymus
4	chr3:88081600-88082200	Enhancers	Primary T cells fromperipheralblood	blood
5	chr3:88081600-88082200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr3:88081600-88082200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr3:88081600-88082400	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr3:88081600-88082400	Enhancers	Primary B cells from cord blood	blood
9	chr3:88081600-88082400	Enhancers	Primary T helper naive cells from peripheral blood	blood
10	chr3:88081600-88082400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
11	chr3:88081600-88082400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr3:88081600-88082600	Enhancers	Primary B cells from peripheral blood	blood
13	chr3:88081600-88083000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr3:88081600-88084000	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr3:88081600-88084000	Enhancers	Primary neutrophils fromperipheralblood	blood
16	chr3:88081600-88084000	Enhancers	Primary T helper cells fromperipheralblood	blood
17	chr3:88081600-88084200	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr3:88081600-88084600	Enhancers	Primary hematopoietic stem cells	blood
19	chr3:88081600-88086800	Weak transcription	Psoas Muscle	Psoas
20	chr3:88081800-88082200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr3:88081800-88082200	Enhancers	Dnd41	blood
22	chr3:88081800-88082200	Enhancers	NHDF-Ad	bronchial
23	chr3:88081800-88082400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
24	chr3:88081800-88082400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr3:88081800-88082400	Enhancers	Liver	Liver
26	chr3:88081800-88082400	Active TSS	Brain Anterior Caudate	brain
27	chr3:88081800-88082600	Enhancers	Thymus	Thymus
28	chr3:88081800-88083000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr3:88081800-88083000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr3:88081800-88083000	Weak transcription	Brain Hippocampus Middle	brain
31	chr3:88081800-88083000	Weak transcription	Brain Substantia Nigra	brain
32	chr3:88081800-88083200	Weak transcription	Primary T cells from cord blood	blood
33	chr3:88081800-88083200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr3:88081800-88083200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr3:88081800-88083200	Weak transcription	Colon Smooth Muscle	Colon
36	chr3:88081800-88083400	Weak transcription	Monocytes-CD14+_RO01746	blood
37	chr3:88081800-88083600	Weak transcription	HSMM	muscle
38	chr3:88081800-88083800	Enhancers	Primary T helper cells PMA-I stimulated	--
39	chr3:88081800-88084000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr3:88081800-88084000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
41	chr3:88081800-88087000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr3:88081800-88087000	Weak transcription	NHEK	skin
43	chr3:88081800-88091200	Weak transcription	Right Atrium	heart
44	chr3:88082000-88082200	Flanking Active TSS	K562	blood
45	chr3:88082000-88082400	Weak transcription	Stomach Smooth Muscle	stomach

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