Variant report

Variant	rs6301
Chromosome Location	chr3:88040682-88040683
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1431155	0.83[EUR][1000 genomes]
rs1431156	0.83[EUR][1000 genomes]
rs1469570	0.83[EUR][1000 genomes]
rs1835544	0.83[EUR][1000 genomes]
rs2344183	0.83[EUR][1000 genomes]
rs2344184	0.83[EUR][1000 genomes]
rs2880793	0.83[EUR][1000 genomes]
rs4431134	0.83[EUR][1000 genomes]
rs6767497	0.83[EUR][1000 genomes]
rs930155	0.83[EUR][1000 genomes]
rs9854250	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877146	chr3:87983962-88159835	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:88030200-88045400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr3:88039400-88040800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr3:88039800-88041000	Strong transcription	Primary hematopoietic stem cells	blood
4	chr3:88040000-88044200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr3:88040600-88045600	Weak transcription	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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